Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 9,586,671 – 9,586,767 |
Length | 96 |
Max. P | 0.700063 |
Location | 9,586,671 – 9,586,767 |
---|---|
Length | 96 |
Sequences | 6 |
Columns | 108 |
Reading direction | forward |
Mean pairwise identity | 84.33 |
Mean single sequence MFE | -31.82 |
Consensus MFE | -22.60 |
Energy contribution | -22.85 |
Covariance contribution | 0.25 |
Combinations/Pair | 1.14 |
Mean z-score | -2.63 |
Structure conservation index | 0.71 |
SVM decision value | 0.35 |
SVM RNA-class probability | 0.700063 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 9586671 96 + 22407834 UUUAUUGAGAU------------UGGGGGUAGAGCCACUGCCUCCGAAUCCAAUUGAGGGUUUGCCCUAGGCCUUGGGCACAUCAAUUCCCAUUGUAAAAACUCUAAA ...((((.(((------------(((((((((.....)))))))).))))))))..(((((((((((........))))....((((....))))...)))))))... ( -31.00) >DroSec_CAF1 14581 96 + 1 UUUAUUGAGAU------------UGGGGGUAGAGCCACUGCCUCCGAAUCCAAUUGAUGGUUUGCCCUAGGCCUUGGGCACAUCAAUUCCUAUUGUAAAACCUCUAAA ......(((.(------------(((((((((.....))))))))))....((((((((...(((((........))))))))))))).............))).... ( -32.40) >DroSim_CAF1 14271 96 + 1 UUUAUUGAGAU------------UGGGGGUAGAGCCACUGCCUCCGAAUCCAAUUGAGGGUUUGCCCUAGGCCUUGGGCACAUCAAUUCCUACUGUAAAACCUCUAAA ...((((.(((------------(((((((((.....)))))))).)))))))).((((.(((((..((((..((((.....))))..))))..))))).)))).... ( -33.70) >DroEre_CAF1 14755 96 + 1 UUUAUUGGGAU------------UCGGGGUGGAGCCACUGCCUCCGAGUCCAAUUGAGGGUUUGCCCUAGGCCUUGGGCACAUCAAUUCCUAUUGUAAAACCUCUGGA .......((((------------((((((..(.....)..)).))))))))....((((.(((((..((((..((((.....))))..))))..))))).)))).... ( -36.50) >DroYak_CAF1 15161 96 + 1 UUUAUUGAGAU------------UGGGGGUAGAGCCACUGCCUCCGAAUGAAAUUGAGGGUUUGCCCUAGGCCUUGGGCACAUCAAUUGCGAUUGUAAAACCUCUAGA ......(((.(------------(((((((((.....))))))))))....(((((..(((.(((((........))))).))).....))))).......))).... ( -30.50) >DroAna_CAF1 54419 97 + 1 UUUAUUGAGUUUUUUCCCUGUUUUGGGGGUAGA----CUGCCGC------CAAUUGAGGGUUUGCCCAAGGCCUUGUGCACAUCAAUUCUUGUUGUAC-GCCUUAAAA ......(.((.....((((...((((.(((...----..))).)------)))...))))...)).)(((((...(((((((........)).)))))-))))).... ( -26.80) >consensus UUUAUUGAGAU____________UGGGGGUAGAGCCACUGCCUCCGAAUCCAAUUGAGGGUUUGCCCUAGGCCUUGGGCACAUCAAUUCCUAUUGUAAAACCUCUAAA ......(((...............((((((((.....))))))))......((((((.....(((((........)))))..)))))).............))).... (-22.60 = -22.85 + 0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:49:39 2006