Locus 3316

Sequence ID 2L_DroMel_CAF1
Location 9,585,893 – 9,585,984
Length 91
Max. P 0.660646
window5266

overview

Window 6

Location 9,585,893 – 9,585,984
Length 91
Sequences 6
Columns 103
Reading direction forward
Mean pairwise identity 79.65
Mean single sequence MFE -18.45
Consensus MFE -10.35
Energy contribution -10.52
Covariance contribution 0.17
Combinations/Pair 1.00
Mean z-score -1.91
Structure conservation index 0.56
SVM decision value 0.27
SVM RNA-class probability 0.660646
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 9585893 91 + 22407834
GUCAUU-GCCC-----AAAAA------GUUUAUUCAACUGCAUUUGAAUGUCAAUUAGCUUAAAUUGCUAGUUGUGACUUACAACAAACGCUAUGGCUAUUAA
(((((.-((..-----.....------...(((((((......))))))).((((((((.......))))))))...............)).)))))...... ( -19.30)
>DroVir_CAF1 19865 92 + 1
CUCACUCGCUC-----UGCAA------GUUUAUUCAACUGCAUUUGAAUGUCAAUUAGCUUAAAUUGCUAGUUGUGACUUACAAAGCAGCCAAAAACUAUUAA
.......(((.-----((.((------((((((((((......))))))).((((((((.......)))))))).))))).)).)))................ ( -20.60)
>DroGri_CAF1 20000 96 + 1
CUCACU-GCUCUAAUGUGUCA------GUUGAUUCAACUGCAUUUGAAUGUCAAUUAACUUAAAUUGCUAGUUGUGACUUAAAAAGCAAACAGAAACUAUUAA
.....(-((((....(((.((------((((...)))))))))..))..((((..(((((.........))))))))).......)))............... ( -14.70)
>DroEre_CAF1 13995 91 + 1
GUCGUU-GCCC-----AAAAA------GUUUAUUCAACUGCAUUUGAAUGUCAAUUAGCGUAAAUUGCUAGUUGUGACUUACAACAAACGCCGUGGCUAUUAA
((((..-((..-----.....------...(((((((......))))))).(((((((((.....)))))))))...............))..))))...... ( -18.70)
>DroMoj_CAF1 20896 89 + 1
CUCACU---UC-----UUCAA------GUUUAUUCAACUGCAUUUGAAUGUCAAUUAGCUUAAAUAGCUAGUUGUGACUUACAAAGCAACCAAAACCUAUUAA
......---..-----.....------...........(((.((((...(((((((((((.....)))))))..))))...)))))))............... ( -15.80)
>DroAna_CAF1 53828 95 + 1
ACUGCU-GUCC-----AAAAAAUAAAUGUUUAUUCAACUGCAUUUGAAUGUCAAUUAGCUUAAAUUGCUAGUUUUGACUUACAACGAACG--ACGGCUAUUAA
...(((-(((.-----......(((((((..........)))))))...((((((((((.......))))))..))))...........)--)))))...... ( -21.60)
>consensus
CUCACU_GCCC_____AAAAA______GUUUAUUCAACUGCAUUUGAAUGUCAAUUAGCUUAAAUUGCUAGUUGUGACUUACAAAGAACGCAAAAGCUAUUAA
...............................((((((......))))))((((((((((.......))))))..))))......................... (-10.35 = -10.52 +   0.17)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:49:38 2006