Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 9,581,675 – 9,581,775 |
Length | 100 |
Max. P | 0.539779 |
Location | 9,581,675 – 9,581,775 |
---|---|
Length | 100 |
Sequences | 6 |
Columns | 105 |
Reading direction | reverse |
Mean pairwise identity | 87.33 |
Mean single sequence MFE | -34.72 |
Consensus MFE | -30.35 |
Energy contribution | -31.88 |
Covariance contribution | 1.53 |
Combinations/Pair | 1.03 |
Mean z-score | -1.41 |
Structure conservation index | 0.87 |
SVM decision value | 0.01 |
SVM RNA-class probability | 0.539779 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 9581675 100 - 22407834 GGCAACUUAACUGUGCUGCGCAGAGCGGGCCCAGUUAGUCAGCCUUGCGCAGUCGAUGCGAACGGACGCGUCGCUCC---AGAGAAAAGUUGAGA--AGAAGUAC .....(((((((..(((((((((.((.(((.......))).)).)))))))))(((((((......)))))))....---.......))))))).--........ ( -36.10) >DroSec_CAF1 9718 100 - 1 GGCAACUUAACUGUGCUGCGCAGAGCGGGCCCAGUUAGUCAGCCUUGCGCAGUCGAUGCGAACGGACGCGUCGCUCC---AGAGAAAAGUUGAGA--AGACGUAC .....(((((((..(((((((((.((.(((.......))).)).)))))))))(((((((......)))))))....---.......))))))).--........ ( -36.10) >DroSim_CAF1 9368 100 - 1 GGCAACUUAACUGUGCUGCGCAGAGCGGGCCCAGUUAGUCAGCCUUGCGCAGUCGAUGCGAACGGACGCGUCGCUCC---AGAGAAAAGUUGAGA--AGACGUAC .....(((((((..(((((((((.((.(((.......))).)).)))))))))(((((((......)))))))....---.......))))))).--........ ( -36.10) >DroEre_CAF1 9907 90 - 1 UCCAACUUAACUGGGCUGCGCAGAGCGGGCCCAGUUAGUCAGCCUUGCGCAGUCGAUGCGAACGGACGCGUCGCUCC---AGAGAAAAGUCGA------------ ..(.((((..(((((((((((((.((.(((.......))).)).)))))))))(((((((......)))))))..))---))....)))).).------------ ( -35.30) >DroYak_CAF1 9901 102 - 1 GGCAACUUAACUGUGCUGCGCAGAGCGGGCCCAGUUAGUCAGCCUUGCGCAGUCGAUGCGAACGGACGCGUCGCUCC---AGAGAAAAGUUGAGAAAAGAAUUGC .....(((((((..(((((((((.((.(((.......))).)).)))))))))(((((((......)))))))....---.......)))))))........... ( -36.10) >DroAna_CAF1 49791 93 - 1 AGCAACUUAACUGAUCUGCGCACAGCGGGACCAGUUAGUCAGCCUUGCGCAGUCGAAGCGAACGGACGCGUCGCUCUUCGAGAAAAAAACGAA------------ ...............(((((((..((..(((......))).))..)))))))(((((((((.((....)))))))..))))............------------ ( -28.60) >consensus GGCAACUUAACUGUGCUGCGCAGAGCGGGCCCAGUUAGUCAGCCUUGCGCAGUCGAUGCGAACGGACGCGUCGCUCC___AGAGAAAAGUUGAGA__AGA_GUAC .....(((((((..((((((((..((.(((.......))).))..))))))))(((((((......)))))))(((.....)))...)))))))........... (-30.35 = -31.88 + 1.53)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:49:37 2006