Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 9,571,268 – 9,571,374 |
Length | 106 |
Max. P | 0.991227 |
Location | 9,571,268 – 9,571,374 |
---|---|
Length | 106 |
Sequences | 3 |
Columns | 106 |
Reading direction | forward |
Mean pairwise identity | 74.09 |
Mean single sequence MFE | -19.83 |
Consensus MFE | -12.20 |
Energy contribution | -12.87 |
Covariance contribution | 0.67 |
Combinations/Pair | 1.00 |
Mean z-score | -2.18 |
Structure conservation index | 0.62 |
SVM decision value | 2.26 |
SVM RNA-class probability | 0.991227 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 9571268 106 + 22407834 UAUAUAAAUACAUAUGUAUGUAUGGUACAUACAUACAUCGAUAGGAAAGUCUAAAAAUCAAAUAUUGGAGUGGCUAACUUAACUUGAAGUUGCCAUUUCUUGAGAU ..............((((((((((...))))))))))((((((((....)))).............((((((((.(((((......)))))))))))))))))... ( -26.10) >DroSec_CAF1 21556 84 + 1 UAUAUAAAUAUG-----------------UACGCACAUAGAUAGGAAAGUCUAAAAAUCAAAUAUUGGAGUGGCUAACGUAACUUCAAGUUGCCAUGUCUU----- .......(((((-----------------...((((.(((((......)))))...........(((((((.((....)).)))))))).))))))))...----- ( -15.70) >DroYak_CAF1 22932 83 + 1 UGUAUAUAUAU-----------------------ACAUAGAUAGGAAAGUCUAAAAAUCAAAUAUUGGAGUGGCUAACGAAACUUCAAGUUGCCAUUUCUUGGGCA (((((....))-----------------------)))(((((......)))))...........(((((((..(....)..)))))))..((((........)))) ( -17.70) >consensus UAUAUAAAUAU__________________UAC__ACAUAGAUAGGAAAGUCUAAAAAUCAAAUAUUGGAGUGGCUAACGUAACUUCAAGUUGCCAUUUCUUG_G__ .....................................(((((......))))).............((((((((.(((..........)))))))))))....... (-12.20 = -12.87 + 0.67)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:49:32 2006