Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 994,457 – 994,595 |
Length | 138 |
Max. P | 0.795717 |
Location | 994,457 – 994,556 |
---|---|
Length | 99 |
Sequences | 3 |
Columns | 99 |
Reading direction | reverse |
Mean pairwise identity | 90.41 |
Mean single sequence MFE | -28.87 |
Consensus MFE | -21.65 |
Energy contribution | -21.10 |
Covariance contribution | -0.55 |
Combinations/Pair | 1.16 |
Mean z-score | -2.51 |
Structure conservation index | 0.75 |
SVM decision value | 0.26 |
SVM RNA-class probability | 0.656891 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 994457 99 - 22407834 AGUAUCAAAUUCAUGGAUGGUAAAGGACUGCUAUGCAUGUACAUAUGUACAUAUAUGCGUGGAAGUCUCUGAAAUCGAUCCAUGUGCAUGGAUGUGGGG ..((((.....(((((((.(...((((((.((((((((((((....)))))....))))))).)))).)).....).)))))))......))))..... ( -32.40) >DroSec_CAF1 115459 94 - 1 AGUAUCAAAUUCAUGCAUGGCAAAGAACUGCU-CGUAUGUACAU----ACAUACAUGCGUGAAAGUCUGUGAAAUCGAUCCAGGUGCAUGGAUGUGGGG ....(((.((((((((((((((......))))-((((((((...----...)))))))).......(((.((......))))))))))))))).))).. ( -27.10) >DroSim_CAF1 116071 94 - 1 AGUAUCAAAUUCAUGCAUGGCAAAGAACUGCU-CGUAUGUACAU----ACAUACAUGCGUGAAAGUCUGUGAAAUCGAUCCAGGUGCAUGGAUGUGGGG ....(((.((((((((((((((......))))-((((((((...----...)))))))).......(((.((......))))))))))))))).))).. ( -27.10) >consensus AGUAUCAAAUUCAUGCAUGGCAAAGAACUGCU_CGUAUGUACAU____ACAUACAUGCGUGAAAGUCUGUGAAAUCGAUCCAGGUGCAUGGAUGUGGGG ....(((.((((((((((((((......)))).((((((((..........))))))))........................)))))))))).))).. (-21.65 = -21.10 + -0.55)
Location | 994,483 – 994,595 |
---|---|
Length | 112 |
Sequences | 3 |
Columns | 112 |
Reading direction | reverse |
Mean pairwise identity | 89.39 |
Mean single sequence MFE | -29.53 |
Consensus MFE | -22.35 |
Energy contribution | -22.13 |
Covariance contribution | -0.21 |
Combinations/Pair | 1.13 |
Mean z-score | -2.74 |
Structure conservation index | 0.76 |
SVM decision value | 0.60 |
SVM RNA-class probability | 0.795717 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 994483 112 - 22407834 UAUCAUUAUAUCUAUGUAGAACUCGAACAGGUUCGCAGAAGUAUCAAAUUCAUGGAUGGUAAAGGACUGCUAUGCAUGUACAUAUGUACAUAUAUGCGUGGAAGUCUCUGAA ..(((...((((((((..(((((......)))))...((....)).....)))))))).....(((((.((((((((((((....)))))....))))))).))))).))). ( -29.90) >DroSec_CAF1 115485 106 - 1 UAGCAU-AUACAUAUGUAGAACUCGAACAGGUUCGCAGAAGUAUCAAAUUCAUGCAUGGCAAAGAACUGCU-CGUAUGUACAU----ACAUACAUGCGUGAAAGUCUGUGAA ..((((-(....))))).(((((......)))))(((((.........(((((((((((((......))))-.((((((....----)))))))))))))))..)))))... ( -29.20) >DroSim_CAF1 116097 106 - 1 UAGCAU-AUACGUAUGUAGAACUCGAACAGGUUCGCAGAAGUAUCAAAUUCAUGCAUGGCAAAGAACUGCU-CGUAUGUACAU----ACAUACAUGCGUGAAAGUCUGUGAA ..((((-(....))))).(((((......)))))(((((.........(((((((((((((......))))-.((((((....----)))))))))))))))..)))))... ( -29.50) >consensus UAGCAU_AUACAUAUGUAGAACUCGAACAGGUUCGCAGAAGUAUCAAAUUCAUGCAUGGCAAAGAACUGCU_CGUAUGUACAU____ACAUACAUGCGUGAAAGUCUGUGAA .......((((...(((.(((((......))))))))...))))....(((((((((((((......))))..((((((........))))))))))))))).......... (-22.35 = -22.13 + -0.21)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:33:10 2006