| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 9,555,750 – 9,555,843 |
| Length | 93 |
| Max. P | 0.545889 |
| Location | 9,555,750 – 9,555,843 |
|---|---|
| Length | 93 |
| Sequences | 6 |
| Columns | 114 |
| Reading direction | reverse |
| Mean pairwise identity | 75.72 |
| Mean single sequence MFE | -50.00 |
| Consensus MFE | -29.31 |
| Energy contribution | -28.43 |
| Covariance contribution | -0.89 |
| Combinations/Pair | 1.39 |
| Mean z-score | -1.41 |
| Structure conservation index | 0.59 |
| SVM decision value | 0.02 |
| SVM RNA-class probability | 0.545889 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 9555750 93 - 22407834 CGCCUACGCCGCCU--C---------CCAGGCGGC---C------GGCGGUAGGCGUGGCC-CCAUAAACGGUGGUCGCUUCGAUUUCGAGGACGGCGGCACCUACUGCGGCGG ((((...((((((.--.---------...))))))---.------.((((((((.((.(((-((((.....))))..((((((....))))).)))).)).)))))))))))). ( -53.20) >DroVir_CAF1 10107 102 - 1 CGCCUAUGCCGCUG--C---------CCAGGCCGCUUCCGGCGGCGGCAUCAAGCGCGCCC-CAAUGAGCGGCGGUCGCUUCGACUUUGAGGAUGGCGGCACCUAUUGCGGCGG (((((((((((((.--.---------((..(((((((..((.((((((.....)).)))))-)...)))))))(((((...)))))....))..))))))).....)).)))). ( -50.30) >DroSec_CAF1 6215 96 - 1 CGCAUACGCCGCCCUCC---------CCAGGCGGC---C------GGCGGUAGGCGUGGCCCCCAUAAAUGGUGGUCGCUUCGACUUCGAGGACGGCGGCACCUACUGCGGGGG .......((((((....---------...))))))---(------.((((((((.((.(((.((((.....))))..((((((....))))).)))).)).)))))))).)... ( -46.20) >DroMoj_CAF1 13798 96 - 1 CGCCUAUGCCGCUG--C---------CCAGGCCGC------CGCCGGCAUCAAGCGCGCCC-CAAUGAGCGGCGGCCGCUUUGACUUUGAGGACGGCGGCACUUACUGCGGCGG ........((((((--(---------..(((((((------((((..(((((((((.((((-(.......)).)))))).))))...)).)).))))))).))....))))))) ( -46.80) >DroAna_CAF1 6918 90 - 1 CGCCUACGC---CU--C---------CCAGGCGGG---G------GUCAGUAGGCGUGGCC-CCAUAAGCGGUGGCCGCUUCGACUUCGAGGAUGGCGGCACGUAUUGCGGCGG (((((((..---((--(---------((....)))---)------)...)))))))..(((-.((...(((((.(((((((((....))))).)))).)).)))..)).))).. ( -45.90) >DroPer_CAF1 8216 108 - 1 CGCCUAUGCCGCCG--CCUCUGCUGGCCAGGCUGC---AGGCCAAGGCGGGAGGCGUGCCG-CGAUAAGCGGCGGCCGCUUCGACUUUGAGGAUGGCGGCACCUACUGCGGCGG ((((((((((((((--((((((((((((.......---.))))..)))).((((((.((((-(........)))))))))))......)))).)))))))).....)).)))). ( -57.60) >consensus CGCCUACGCCGCCG__C_________CCAGGCGGC___C______GGCAGUAGGCGUGCCC_CCAUAAGCGGCGGCCGCUUCGACUUCGAGGACGGCGGCACCUACUGCGGCGG ((((...(((...................)))..............((((.((((((...........)))((.(((((((((....))))).)))).)).))).)))))))). (-29.31 = -28.43 + -0.89)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:49:28 2006