Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 9,555,611 – 9,555,710 |
Length | 99 |
Max. P | 0.549629 |
Location | 9,555,611 – 9,555,710 |
---|---|
Length | 99 |
Sequences | 6 |
Columns | 103 |
Reading direction | reverse |
Mean pairwise identity | 78.14 |
Mean single sequence MFE | -36.55 |
Consensus MFE | -22.27 |
Energy contribution | -22.13 |
Covariance contribution | -0.14 |
Combinations/Pair | 1.21 |
Mean z-score | -1.42 |
Structure conservation index | 0.61 |
SVM decision value | 0.03 |
SVM RNA-class probability | 0.549629 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 9555611 99 - 22407834 GGUCCCAAGCACCAGGGCGCCUACGCCGGAGCCUGGAACUAUGGCUUCGAGGUGUCCGGAUCGUACAUCUGGCCCAGGUGAGUGUGG----CACACUUGUGUA .(((.((..((((.((((((((....(((((((.........)))))))))))))))((..((......))..)).))))..)).))----)(((....))). ( -40.60) >DroVir_CAF1 9984 83 - 1 GGCCCCAAGCACCAGGGCGCCUAUGCAGGUGCCUGGAACUAUGGCUUUGAGGUAUCCGGAUCGUACAUUUGGCCCAGGUGAGU-------------------- ((((...((..(((((.(((((....))))))))))..))..))))......((((.((..((......))..)).))))...-------------------- ( -26.70) >DroGri_CAF1 10444 94 - 1 GGCCCCAAACAUCAAGGCGCCUAUGCCGGCGCCUGGAACUACGGCUUUGAGGUAUCCGGAUCGUACAUAUGGCCCAGGUACGUUUUA----AGCUUAA----- ...........((.(((((((......))))))).)).....(((((.((.(((((.((..(((....)))..)).))))).))..)----))))...----- ( -32.40) >DroEre_CAF1 6582 94 - 1 GGUCCCAAGCACCAGGGCGCCUACGCCGGCGCCUGGAACUACGGCUUCGAGGUGUCCGGAUCGUACAUCUGGCCCAGGUGAGUGGGA----GCUACUC----- (.(((((..((((.((((...(((((((((((((.((((....).))).))))).))))..))))......)))).))))..)))))----.).....----- ( -48.10) >DroMoj_CAF1 13664 94 - 1 GGGCCGAAGCAUCAGGGCGCGUAUGCUGGCGCCUGGAAUUAUGGCUUUGAAGUAUCCGGAUCGUACAUUUGGCCCAGGUAACUAUAC----AACAUUU----- ((((((((...((.((((((........)))))).))..(((((.((((.......)))))))))..))))))))............----.......----- ( -29.30) >DroAna_CAF1 6780 98 - 1 GGUCCUAAGCACCAGGGCGCCUACGCCGGAGCCUGGAACUACGGCUUCGAGGUCUCCGGCUCGUACAUCUGGCCCAGGUGAGUUCCAAAGAGGCAUUC----- .(((((.......)))))((((..((((((((((.((((....).))).))).))))))).....((((((...))))))..........))))....----- ( -42.20) >consensus GGUCCCAAGCACCAGGGCGCCUACGCCGGCGCCUGGAACUACGGCUUCGAGGUAUCCGGAUCGUACAUCUGGCCCAGGUGAGUGUGA____AACAUUC_____ .........((((.((((...((((((((.((((.((((....).))).))))..))))..))))......)))).))))....................... (-22.27 = -22.13 + -0.14)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:49:27 2006