Locus 3307

Sequence ID 2L_DroMel_CAF1
Location 9,553,658 – 9,553,748
Length 90
Max. P 0.500000
window5253

overview

Window 3

Location 9,553,658 – 9,553,748
Length 90
Sequences 6
Columns 96
Reading direction reverse
Mean pairwise identity 77.84
Mean single sequence MFE -24.73
Consensus MFE -17.60
Energy contribution -17.22
Covariance contribution -0.39
Combinations/Pair 1.38
Mean z-score -0.94
Structure conservation index 0.71
SVM decision value -0.07
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 9553658 90 - 22407834
CCUUCUUCAUU------UCUUUGCAGAUCCAAUCACACCGAGUCCAAUGCUAGCUUCACCAUGGAGGACGAACAGCUGGAUCCCACGGUGGUGGAG
...(((.((..------....)).)))((((....(((((.(((((..(((.(((((......)))).)....))))))))....))))).)))). ( -23.30)
>DroEre_CAF1 4795 96 - 1
CCUCAUUCACUUCCCUGCCUCUGCAGAUCCAACCACACCGAGUCCAAUGCCAGCUUCACCAUGGAGGACGAGCAGCUGGACCCCACGGUGGUGGAG
..............((((....)))).((((....(((((.(((((.(((..(((((......)))).)..)))..)))))....))))).)))). ( -31.40)
>DroWil_CAF1 9332 88 - 1
C--CAUUUGGU------UCUUUUCAGAUCCACACACACAGAGUCCAAUGCCAGUUUUACAAUGGAAGAUGAACAGCUGGAUCCCACAGUGGUCGAA
(--(((((((.------........((((((......((...((((.((.........)).))))...))......))))))))).)))))..... ( -17.40)
>DroYak_CAF1 3498 93 - 1
CCUCAUUCAUU---CAUUCUUUACAGAUCCAACCACACCGAGUCCAAUGCUAGCUUCACCAUGGAGGACGAGCAGCUGGAUCCCACGGUGGUGGAG
...........---.............((((....(((((.(((((.((((..((((......))))...))))..)))))....))))).)))). ( -27.60)
>DroMoj_CAF1 7531 88 - 1
-------UAAUUCUCA-UCUUCAUAGAUCUGCGCACACAGAAUCCAAUGCCAGUUUUACCAUGGAGGAUGAGCAGCUGGAUCCCACGGUAGUGGAG
-------.....((((-(((((.((((.(((.(((............)))))).)))).....)))))))))..........((((....)))).. ( -22.50)
>DroAna_CAF1 5043 89 - 1
ACUCUUGGAUU------UCUUU-UAGAUCCAAUCACACAGAGUCCAAUGCCAGUUUCACCAUGGAGGAUGAGCAACUGGACCCCACUGUGGUGGAG
.((((((((((------(....-.)))))))....(((((.(((((.(((((.((((......)))).)).)))..)))))....)))))..)))) ( -26.20)
>consensus
CCUCAUUCAUU______UCUUUACAGAUCCAACCACACAGAGUCCAAUGCCAGCUUCACCAUGGAGGACGAGCAGCUGGAUCCCACGGUGGUGGAG
...........................((((....(((((.(((((.(((...((((......))))....)))..)))))....))))).)))). (-17.60 = -17.22 +  -0.39)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:49:26 2006