Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 9,553,276 – 9,553,396 |
Length | 120 |
Max. P | 0.757954 |
Location | 9,553,276 – 9,553,396 |
---|---|
Length | 120 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 87.11 |
Mean single sequence MFE | -49.67 |
Consensus MFE | -41.90 |
Energy contribution | -41.99 |
Covariance contribution | 0.09 |
Combinations/Pair | 1.25 |
Mean z-score | -1.93 |
Structure conservation index | 0.84 |
SVM decision value | 0.49 |
SVM RNA-class probability | 0.757954 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 9553276 120 - 22407834 CUGGCGCGUUCGCGCAAACUCCGCGACCGAAUUGCGGCCGCUUUGAGCUCAGCGCAGCGUGCCCUCAAGAUGGCGAUGCAGCGCUCCGACAUGGCCAUUUCCCGCAUGGCCACCGCGGCG ...((((....))))......(((((.....)))))(((((.........(((((.(((((((........))).)))).)))))......(((((((.......)))))))..))))). ( -49.30) >DroVir_CAF1 6780 120 - 1 CUGGCGCGUUCGCGCAAAUUCCGUGACCGCAUCACGGCCGCCGUCAAUUCCGCGCAGCGCGCUCUCAAGAUGGCCAUGCAACGCUCGGACAUGGCCAUCUCGCGCAUGGCCACAGCCGCA ..((((((.(((((.......))))).))).....((((((((.......)).)).(((((......((((((((((((........).))))))))))))))))..))))...)))... ( -54.40) >DroGri_CAF1 6755 120 - 1 CUGGCACGUUCGCGCAAAUUCCGUGACCGCAUCACGGCCGCCGUCAAUUCCGCGCAGCGUGCUCUCAAAAUGGCCAUGCAGCGCUCCGAUAUGGCCAUCUCGCGCAUGGCCACCGCCGCU ..((((((((.((((.((((((((((.....))))))........))))..)))))))))))).......(((((((((.(((....(((......))).))))))))))))........ ( -45.30) >DroWil_CAF1 8952 120 - 1 CUGGCGCGUUCGCGCAAAUUCCGUGACCGCAUUACGGCCGCCGUUAAUUCAGCCCAACGUGCCCUCAAAAUGGCCAUGCAACGUUCCGACAUGGCCAUUUCACGCAUGGCCACUGCCGCA ..((((((.(((((.......))))).))).....((((((.(......).)).....((((.....((((((((((((........).)))))))))))...))))))))...)))... ( -44.20) >DroMoj_CAF1 7130 120 - 1 CUGGCGCGUUCGCGCAAAUUCCGUGACCGUAUCACGGCCGCCGUUAAUUCCGCGCAGCGUGCCCUCAAAAUGGCCAUGCAGCGCUCCGACAUGGCCAUCUCGCGCAUGGCCACAGCCGCU ..((((((((.((((.(((((.(((.(((.....))).))).)..))))..)))))))))))).......(((((((((.(((..((.....))......))))))))))))........ ( -46.60) >DroAna_CAF1 4662 120 - 1 CUGGCGCGCUCCCGCAAAUUCCGCGACCGAAUCACGGCGGCGGUGAACGCGGCCCAGCGCGCCCUCAAGAUGGCCAUGCAGCGGUCGGACAUGGCCAUCUCCCGCAUGGCCACAGCCGCG ..((((((((.((((.....((((..(((.....)))..)))).....))))...))))))))....((((((((((((........).)))))))))))..(((..(((....)))))) ( -58.20) >consensus CUGGCGCGUUCGCGCAAAUUCCGUGACCGCAUCACGGCCGCCGUCAAUUCCGCGCAGCGUGCCCUCAAAAUGGCCAUGCAGCGCUCCGACAUGGCCAUCUCGCGCAUGGCCACAGCCGCA ..((((((((.((((.....(.(((.(((.....))).))).)........))))))))))))....((((((((((((........).)))))))))))...((..(((....))))). (-41.90 = -41.99 + 0.09)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:49:24 2006