Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 9,551,696 – 9,551,791 |
Length | 95 |
Max. P | 0.987503 |
Location | 9,551,696 – 9,551,791 |
---|---|
Length | 95 |
Sequences | 6 |
Columns | 103 |
Reading direction | forward |
Mean pairwise identity | 71.86 |
Mean single sequence MFE | -21.95 |
Consensus MFE | -16.58 |
Energy contribution | -16.83 |
Covariance contribution | 0.25 |
Combinations/Pair | 1.33 |
Mean z-score | -1.82 |
Structure conservation index | 0.76 |
SVM decision value | 2.08 |
SVM RNA-class probability | 0.987503 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 9551696 95 + 22407834 CAAAAUUUAUUAUCACUCACCUUCAUUUUCU-UGCCGCCUCCACCGCC------GCCUCCUU-UUCCGCCCAUGGCCAUGCCCACCGGCGUGGCUGGCUUAGC ...............................-.((.((.......)).------))......-....(((...(((((((((....))))))))))))..... ( -22.40) >DroSec_CAF1 2121 97 + 1 CAAAAUUUGUUAUCACUCACCUUCAUUUUUUUUGCCGCCUCCACCGCC------GCCUCCUUUUUCCGCCUAUGGCCAUGCCCACCGGCGUGGCUGGUUUGGC .................................((.((.......)).------))...........(((..((((((((((....))))))))))....))) ( -22.70) >DroWil_CAF1 7302 84 + 1 -CA----------AACUCACCUUCAUUUUCU-UGCCGCCGCCUCCAC------CGCCUGCUU-UACCGCCCAUUGCCAUGCCCACCGGCGUUGCUGGCUUGGC -..----------..................-.(((((.((......------.))..))..-....(((....((.(((((....))))).)).)))..))) ( -17.60) >DroMoj_CAF1 5520 86 + 1 CAAAAUUUUCAUUGACUCACCUUCAUUUUCU-UGCCACCACCGC---------------CUU-UGCCGCCCAUGGCCACGCCCACCGGUGUCGCGGGCUUAGC ...............................-.((.....((((---------------...-.((((....)))).(((((....))))).)))).....)) ( -15.60) >DroAna_CAF1 3020 88 + 1 -------------AACUCACCUUCAUUUUCU-UGCCGCCACCGCCGCCUCCACCGCCUCCUU-UACCACCCAUGGCCAUGCCCACGGGCGUGGCCGGCUUGGC -------------..................-....((((..(((((.......))......-..........(((((((((....)))))))))))).)))) ( -30.30) >DroPer_CAF1 4266 77 + 1 ------AUGCUGCCACUCACCUUCAUCUUCU-UUCCGCC------------------ACCUU-UGCCGCCCAUGGCCAUGCCCACCGGUGUGGCCGGCUUGGC ------.....((((................-....((.------------------.....-.)).(((...(((((((((....)))))))))))).)))) ( -23.10) >consensus _AA___UU__U_UCACUCACCUUCAUUUUCU_UGCCGCCACCACCGC_______GCCUCCUU_UACCGCCCAUGGCCAUGCCCACCGGCGUGGCUGGCUUGGC ...................................................................(((...(((((((((....))))))))))))..... (-16.58 = -16.83 + 0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:49:22 2006