| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 9,550,042 – 9,550,146 |
| Length | 104 |
| Max. P | 0.593392 |
| Location | 9,550,042 – 9,550,146 |
|---|---|
| Length | 104 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 84.17 |
| Mean single sequence MFE | -27.03 |
| Consensus MFE | -18.91 |
| Energy contribution | -19.13 |
| Covariance contribution | 0.23 |
| Combinations/Pair | 1.07 |
| Mean z-score | -1.89 |
| Structure conservation index | 0.70 |
| SVM decision value | 0.12 |
| SVM RNA-class probability | 0.593392 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 9550042 104 - 22407834 AAAUGCCUUUGAUGUUUCUGUAAUUGAAAUGGAUUUACAAUUGGUGCACUUAACUUGUACCAAUUUAUGUAAACACAUAGCAUCGUUCAGUAUUUUGACGCCA----------------U ((((((...(((((((((.......)))(((..(((((((((((((((.......)))))))))...))))))..))).))))))....))))))........----------------. ( -24.50) >DroSec_CAF1 451 120 - 1 AAAUGCCUUUGAUGUCGAUGUGGUUGAAAUUGAUUUACAAUUGGUGCACUUAACUUGUACCAAUCUCUGUAAACACAUAGCAUCGCUCAGUAUUUUGACGCCAAUUGUGCAUUUAUACAU ((((((....(((((..((((((((......)))((((((((((((((.......)))))))))...))))).))))).)))))((((((....)))).)).......))))))...... ( -29.90) >DroSim_CAF1 916 120 - 1 AAAUGCCUUUGAUGUCUCUGUGGUUGAAAUUGAUUUACAAUUGGUGCACUUAACUUGUAACAAUUUCUGUAAGCACAUAGCAUCGCUCAGGAUUUUGACGCCAAUGGUGCAUUUAUACAU ((((((((..((((.((.((((.(((((((((..((((((..((....))....)))))))))))))...)).)))).))))))((((((....)))).))....)).))))))...... ( -26.70) >consensus AAAUGCCUUUGAUGUCUCUGUGGUUGAAAUUGAUUUACAAUUGGUGCACUUAACUUGUACCAAUUUCUGUAAACACAUAGCAUCGCUCAGUAUUUUGACGCCAAU_GUGCAUUUAUACAU ..........(((((...((((...........(((((((((((((((.......)))))))))...))))))))))..)))))((((((....)))).))................... (-18.91 = -19.13 + 0.23)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:49:17 2006