Locus 330

Sequence ID 2L_DroMel_CAF1
Location 991,804 – 991,897
Length 93
Max. P 0.978578
window522

overview

Window 2

Location 991,804 – 991,897
Length 93
Sequences 5
Columns 103
Reading direction forward
Mean pairwise identity 92.68
Mean single sequence MFE -28.38
Consensus MFE -26.76
Energy contribution -26.96
Covariance contribution 0.20
Combinations/Pair 1.06
Mean z-score -1.55
Structure conservation index 0.94
SVM decision value 1.82
SVM RNA-class probability 0.978578
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 991804 93 + 22407834
AGCGAUGCGGUUUGCUGCAUAUCGUUGUGGUUGAGUGCAUCAAACAUCAAUCAAUUCAAUGGUACUUGG------AACCAGGCACACAGAUGCUCGCAC----
.((((.(((.((((.(((.(((((((((((((((((.......)).)))))))...)))))))).(((.------...))))))..)))))))))))..---- ( -27.80)
>DroSec_CAF1 112716 93 + 1
AGCGAUGCGGUUUGCUGCAUAUCGUUGUGGUUGAGUGCAUCAAACAUCAAUCAAUUCAAUGGUACUUGG------AACCAGGCACACAGAUGCUCGCAC----
.((((.(((.((((.(((.(((((((((((((((((.......)).)))))))...)))))))).(((.------...))))))..)))))))))))..---- ( -27.80)
>DroSim_CAF1 113353 93 + 1
AGCGAUGCGGUUUGCUGCAUAUCGUUGUGGGUGAGUGCAUCAAACAUCAAUCAAUUCAAUGGUACUUGC------AACCAGGCACACAGAUGCUCGCAC----
.((((.(((.((((.(((.....((((..(((((((.......)).)).((((......)))))))..)------)))...)))..)))))))))))..---- ( -24.80)
>DroEre_CAF1 118562 91 + 1
AGCGAUGCGGUUUGCUGCAUAUCGUUGCGGUUGAGUGCAUCAAACAUCAAUCAAUUCAAUGGUACUUGG--------CCAGGCACACAGACGCUCGCAC----
.((((.(((((.(((((((......)))(((..(((((.......................)))))..)--------)).)))).))...)))))))..---- ( -30.40)
>DroYak_CAF1 119464 103 + 1
AGCGAUGCGGUUUGCUGCAUAUCGUUGUGGUUGAGUGCAUCAAACAUCAAUCAAUUCAAUGGUACUUGUACUUGCAAGCAGGCACACAGAUGCUCGCACAUCC
.(((((((((....)))))((((..((((.(((..((((....(((...((((......))))...)))...))))..))).))))..)))).))))...... ( -31.10)
>consensus
AGCGAUGCGGUUUGCUGCAUAUCGUUGUGGUUGAGUGCAUCAAACAUCAAUCAAUUCAAUGGUACUUGG______AACCAGGCACACAGAUGCUCGCAC____
.((((.(((.((((.(((.(((((((((((((((((.......)).)))))))...)))))))).((((........)))))))..)))))))))))...... (-26.76 = -26.96 +   0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:33:08 2006