Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 146,104 – 146,211 |
Length | 107 |
Max. P | 0.500000 |
Location | 146,104 – 146,211 |
---|---|
Length | 107 |
Sequences | 6 |
Columns | 113 |
Reading direction | reverse |
Mean pairwise identity | 80.18 |
Mean single sequence MFE | -37.98 |
Consensus MFE | -25.24 |
Energy contribution | -27.05 |
Covariance contribution | 1.81 |
Combinations/Pair | 1.09 |
Mean z-score | -1.24 |
Structure conservation index | 0.66 |
SVM decision value | -0.06 |
SVM RNA-class probability | 0.500000 |
Prediction | OTHER |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 146104 107 - 22407834 CACGGUCAGAGACUGCAUCUGCCCCAGGGUUUCGGAGGUACACUCCACAUUACGUGGGGCUUUUUCUG------GACACCGUUCGUUCUGCGGCUUCUGCUGCACUGACACGG ..((((((((((..((....((((((.(.....((((.....))))......).)))))).......(------(((...)))))))))(((((....))))).))))).)). ( -40.30) >DroPse_CAF1 35466 113 - 1 CUCUGGCUGGGCGUAUAUUUGCCAAAAGGCAAUUGACGCGCAUUCAACACUGUGCGAGGCUAUAUCUUACAAUCGGAACAAUCAGCUUUCCGGCACCUGCUGCACCAACACGG ...((..((.((((....(((((....)))))...)))).))..))...(((((.(..((.............(((((.........)))))((....)).))..)..))))) ( -29.50) >DroSec_CAF1 28549 107 - 1 CACGGUCAGAGAGUGCAUCUGCCCCAGGGUUUCGGAGAUACACUCCACAUUACGUGGGGCUUUUUCUG------GACACUGUUCGUUCUGCGGCAUCUGCUGCACUGACACGG ..(((((((.(...(((..((((.(((..(((((((((....((((((.....))))))...))))))------))........)..))).))))..)))..).))))).)). ( -39.80) >DroSim_CAF1 30169 107 - 1 CACGGUCAGAGAGUGCAUCUGCCCCAGGGUUUCGGAGGUACACUCCACAUUACGUGGGGCUUUUUCUG------GACACCGUUCGUUCUGCGGCAUCUGCUGCACUGACACGG ...(..(((((((.......((((((.(.....((((.....))))......).)))))).)))))))------..).(((((((...((((((....)))))).))).)))) ( -40.80) >DroEre_CAF1 40092 107 - 1 CUCGGUCAAAGAGUGCAUCUGCCCCAGAGUCUCGGAGAUACACUCCACAUUCCGCGGGGCUUUUUCUG------GGCACAGUUCGGUCUGCGGCAUAUGCUGCACUGACACAG ....((((.(((.((...(((.(((((((((((((((.....)))).(.....).)))))....))))------))..)))..)).)))(((((....)))))..)))).... ( -35.80) >DroYak_CAF1 28721 107 - 1 CUCGGUCAAAGAGUGCAUCUGCCCCAGAGUCUCGGAGAUACACUCCACAUUACGUGGGGCUUUUUCUG------GACACAGUGCGGUCUGCGGCAUAUGCUGCACUGACACGG ..((((((.(((.((((((((...))))(((.((((((....((((((.....))))))...))))))------)))....)))).)))(((((....)))))..)))).)). ( -41.70) >consensus CACGGUCAGAGAGUGCAUCUGCCCCAGGGUUUCGGAGAUACACUCCACAUUACGUGGGGCUUUUUCUG______GACACAGUUCGUUCUGCGGCAUCUGCUGCACUGACACGG ....(((((...........((((((.(.....((((.....))))......).))))))............................((((((....))))))))))).... (-25.24 = -27.05 + 1.81)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:23:46 2006