Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 9,548,908 – 9,549,016 |
Length | 108 |
Max. P | 0.969151 |
Location | 9,548,908 – 9,549,016 |
---|---|
Length | 108 |
Sequences | 3 |
Columns | 108 |
Reading direction | reverse |
Mean pairwise identity | 80.00 |
Mean single sequence MFE | -6.30 |
Consensus MFE | -6.30 |
Energy contribution | -6.30 |
Covariance contribution | -0.00 |
Combinations/Pair | 1.00 |
Mean z-score | 0.18 |
Structure conservation index | 1.00 |
SVM decision value | 1.64 |
SVM RNA-class probability | 0.969151 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 9548908 108 - 22407834 AUGAAACAAAAAGAGAAACAAACAACAACAACUUAACCUAAUCAAUGUUUAAUCAUGAUAAAUAAACGCGUAAUAUAUUUAAUCUACGGCUACUUAAUGUAAUACAUA ........................................((((.((......))))))..........(((.((((((....(....)......)))))).)))... ( -6.30) >DroEre_CAF1 7966 81 - 1 ---------------------------ACACCUUAACCUAAUCAAUGUUUAAUCAUGAUAAAUAAACGCGUAAUAUAUUUAAUCUACGGCUACUUAAUGUAAUACAUA ---------------------------.............((((.((......))))))..........(((.((((((....(....)......)))))).)))... ( -6.30) >DroYak_CAF1 8403 99 - 1 AAGAAACAAAA------ACAAACA---ACAAUUUCCCCUAAUCAAUGUUUAAUCAUGAUAAAUAAACGCGUAAUAUAUUUAAUCUACGGCUACUUAAUGUAAUACAUA ...........------.......---.............((((.((......))))))..........(((.((((((....(....)......)))))).)))... ( -6.30) >consensus A_GAAACAAAA______ACAAACA___ACAACUUAACCUAAUCAAUGUUUAAUCAUGAUAAAUAAACGCGUAAUAUAUUUAAUCUACGGCUACUUAAUGUAAUACAUA ........................................((((.((......))))))..........(((.((((((....(....)......)))))).)))... ( -6.30 = -6.30 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:49:14 2006