Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 9,548,037 – 9,548,133 |
Length | 96 |
Max. P | 0.514573 |
Location | 9,548,037 – 9,548,133 |
---|---|
Length | 96 |
Sequences | 5 |
Columns | 98 |
Reading direction | forward |
Mean pairwise identity | 83.06 |
Mean single sequence MFE | -21.58 |
Consensus MFE | -15.32 |
Energy contribution | -16.56 |
Covariance contribution | 1.24 |
Combinations/Pair | 1.17 |
Mean z-score | -1.55 |
Structure conservation index | 0.71 |
SVM decision value | -0.04 |
SVM RNA-class probability | 0.514573 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 9548037 96 + 22407834 CUCAAGUCUUUCAUUUUCUAAGGUUUUACAUUUGUGGAGCUUAUUCAUUUCAAU--UUUCUGUAUGACACGAUCUAGAAAGGAUGUCGGAUUGAGAAA (((((.(((..((((((((((((((((((....)))))))))..((((..((..--....)).)))).......)))))..))))..))))))))... ( -21.00) >DroSec_CAF1 7276 97 + 1 CUCAAGUCUUUCAUUUCGUAAGGUUCUACAUUUGUGGAGCUUAA-CAUUUCAAUCAUUUCUGCAUGACACGAUCUAGAAAGAAUGUCGGAUUGGGAAU (((((.(((..(((((.((.(((((((((....))))))))).)-)..........((((((.((......)).)))))))))))..))))))))... ( -23.90) >DroSim_CAF1 7293 97 + 1 CUCAAGUCUUUCAUUUCGUAAGGUUCUACAUUUGUGGAGCUUAU-CAUUUCAAUCAUUUCUGCAUGACACGAUCUAGAAAUAAUGUCGGAUUGGGAAU (((((.(((..((((.....(((((((((....)))))))))..-..........(((((((.((......)).)))))))))))..))))))))... ( -21.50) >DroEre_CAF1 7096 85 + 1 CUCAAGUCUUUCAUUUCGUAAGGUUCUGCAUUUGUGGAGCUUAU-CAUUUUCAC--AUUCCCGAU----------AUAAUGAACAUCGAAUUGGGAAA ........(..((.((((..((((((..(....)..)))))).(-((((.((..--......)).----------..)))))....)))).))..).. ( -18.60) >DroYak_CAF1 7493 95 + 1 CUCAAGUCUUUCAUUUGGUAAGGUUCUACAUUUGUGGAGCUUAU-CAUUUGCAU--UUUCACAAUGACACGAUCUAGAAAGAAUGUAGGAUUGGGAAA (((((.((((.(((((((((((.((((((....)))))))))))-)...(((((--(.....)))).))...........))))).)))))))))... ( -22.90) >consensus CUCAAGUCUUUCAUUUCGUAAGGUUCUACAUUUGUGGAGCUUAU_CAUUUCAAU__UUUCUGCAUGACACGAUCUAGAAAGAAUGUCGGAUUGGGAAA (((((.(((..(((((....(((((((((....)))))))))..............((((((.((......)).)))))))))))..))))))))... (-15.32 = -16.56 + 1.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:49:12 2006