Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 9,544,253 – 9,544,384 |
Length | 131 |
Max. P | 0.724274 |
Location | 9,544,253 – 9,544,344 |
---|---|
Length | 91 |
Sequences | 6 |
Columns | 91 |
Reading direction | reverse |
Mean pairwise identity | 78.10 |
Mean single sequence MFE | -27.07 |
Consensus MFE | -18.76 |
Energy contribution | -18.18 |
Covariance contribution | -0.58 |
Combinations/Pair | 1.25 |
Mean z-score | -1.30 |
Structure conservation index | 0.69 |
SVM decision value | 0.41 |
SVM RNA-class probability | 0.724274 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 9544253 91 - 22407834 GGCGUAUACCCAUACUGCUUAAGUGGAGCCAUCCACUUGGCAUCCGCAUCCGCAACUGUAUCCUUUGAGCUUCCCCCCAGGCAGAAGCCAA (((((((....)))).(((((((((((((((......)))).)))))....((....)).....))))))................))).. ( -25.80) >DroPse_CAF1 3438 82 - 1 GCACUCCAUCCGUACCGUUUGAGCGGAGCCAUCCAUUUGGCAUCUGCCUC---AUCUGAAGCCUGCGUGC------CGUGGCAGGAGCCGA ...((((........((..((((((((((((......)))).)))).)))---)..))..(((.(((...------)))))).)))).... ( -27.70) >DroSec_CAF1 3488 88 - 1 GCCGUAUAACCAUACUGCUUAAGUGGAGCCAUCCACUUGGCAUCCGCGUCCGAAACUGCAUCCUUUGAGCCU---CCCAGGCAGAAGCCAA (((((((....)))).(((((((((((((((......)))).)))))((........)).....))))))..---....)))......... ( -25.10) >DroSim_CAF1 3504 88 - 1 GCCGUAUAACCAUACUGCUUGAGUGGAGCCAUCCACUUGGCAUCCGCGUCCGGAACUGCAUCCUUUGAGCCU---CCCAGGCAGAAGCCAA (((((((....)))).(((..((((((((((......)))).)))))....(((......))).)..)))..---....)))......... ( -28.00) >DroYak_CAF1 3494 88 - 1 GGCGUAUAUCCAUACUGCUUGAGUGGGGCCAUCCACUUGGCAUCCGCGUCCGGAACUGCAUCCUUCGAACCG---CCAAGGCAAAAGCCAA (((((((....))))(((((..((((.((((......)))).((((....))))...............)))---)..)))))...))).. ( -28.60) >DroPer_CAF1 4021 82 - 1 GCACUCCAUCCGUACUGUUUGAGCGGAGCCAUCCAUUUGGCAUCUGCCUC---AUCUGAAGCCUGCGUGC------CGUGGCAGGAGCCGA ...((((.(((((.(.....).)))))(((((......((((((.((.((---....)).))..).))))------)))))).)))).... ( -27.20) >consensus GCCGUAUAUCCAUACUGCUUGAGUGGAGCCAUCCACUUGGCAUCCGCGUCCG_AACUGCAUCCUUCGAGCCU___CCCAGGCAGAAGCCAA ......................(((((((((......)))).)))))................................(((....))).. (-18.76 = -18.18 + -0.58)
Location | 9,544,290 – 9,544,384 |
---|---|
Length | 94 |
Sequences | 6 |
Columns | 94 |
Reading direction | reverse |
Mean pairwise identity | 83.08 |
Mean single sequence MFE | -29.20 |
Consensus MFE | -20.20 |
Energy contribution | -20.29 |
Covariance contribution | 0.09 |
Combinations/Pair | 1.22 |
Mean z-score | -1.63 |
Structure conservation index | 0.69 |
SVM decision value | -0.02 |
SVM RNA-class probability | 0.525419 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 9544290 94 - 22407834 GGUGAAUUCACCAUGCUCCACUUUGUUCUUCAGAUGCUGCGGCGUAUACCCAUACUGCUUAAGUGGAGCCAUCCACUUGGCAUCCGCAUCCGCA ((((....)))).(((.....((((.....))))...(((((.((((....))))((((.(((((((....))))))))))).)))))...))) ( -29.70) >DroPse_CAF1 3469 91 - 1 GGUAAAGUCGCCGUGCUCCACUCUGUUUUUCAGCUGGCUGGCACUCCAUCCGUACCGUUUGAGCGGAGCCAUCCAUUUGGCAUCUGCCUC---A ((((..(..(..((((((((..(((.....))).)))..)))))..)..)..))))...((((((((((((......)))).)))).)))---) ( -30.20) >DroSec_CAF1 3522 94 - 1 GGUGAAUUCACCAUGCUCCACUUUGUUCUUCAGAUGCUGGGCCGUAUAACCAUACUGCUUAAGUGGAGCCAUCCACUUGGCAUCCGCGUCCGAA ((((....)))).................((.(((((.(((..((((....))))((((.(((((((....))))))))))))))))))).)). ( -30.30) >DroSim_CAF1 3538 94 - 1 GGUGAAUUCACCAUGCUCCACUUUGUUCUUCAGAUGCUGGGCCGUAUAACCAUACUGCUUGAGUGGAGCCAUCCACUUGGCAUCCGCGUCCGGA ((((....))))....(((....((.....))(((((.(((((((((....)))).....(((((((....)))))))))).)).))))).))) ( -29.90) >DroYak_CAF1 3528 94 - 1 GGUGAAUUCACCGUGCUCCACUUUGUUCUUCAGAUGCUGCGGCGUAUAUCCAUACUGCUUGAGUGGGGCCAUCCACUUGGCAUCCGCGUCCGGA ((((....))))....(((..((((.....))))....((((.((((....))))((((.(((((((....))))))))))).))))....))) ( -27.60) >DroPer_CAF1 4052 91 - 1 GGUAAAGUCGCCGUGCUCCACUCUGUUUUUCAGCUGGCUGGCACUCCAUCCGUACUGUUUGAGCGGAGCCAUCCAUUUGGCAUCUGCCUC---A (((......)))((((((((..(((.....))).)))..)))))...............((((((((((((......)))).)))).)))---) ( -27.50) >consensus GGUGAAUUCACCAUGCUCCACUUUGUUCUUCAGAUGCUGGGCCGUAUAUCCAUACUGCUUGAGUGGAGCCAUCCACUUGGCAUCCGCGUCCG_A ((((....))))..(((((((((.((.......((((......))))......)).....)))))))((((......))))....))....... (-20.20 = -20.29 + 0.09)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:49:11 2006