| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 9,536,882 – 9,536,985 |
| Length | 103 |
| Max. P | 0.861587 |
| Location | 9,536,882 – 9,536,985 |
|---|---|
| Length | 103 |
| Sequences | 6 |
| Columns | 110 |
| Reading direction | forward |
| Mean pairwise identity | 73.57 |
| Mean single sequence MFE | -35.40 |
| Consensus MFE | -23.45 |
| Energy contribution | -22.48 |
| Covariance contribution | -0.97 |
| Combinations/Pair | 1.48 |
| Mean z-score | -1.37 |
| Structure conservation index | 0.66 |
| SVM decision value | 0.83 |
| SVM RNA-class probability | 0.861587 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 9536882 103 + 22407834 GUUAUAUUUAUAUAAUUUG-------UAUGUUAUAGGUGUUCGCGCUAACAUCUCGAGCAGCAUUUAUCGUGGCGCUGGUGGCAGCCAAGCCCAGGCUCUCAGUGCUAAC ((((((....)))))).((-------(.((((..(((((((......)))))))..))))))).......((((((((..((.((((.......)))))))))))))).. ( -26.50) >DroVir_CAF1 3698 109 + 1 UCUAAACUCAU-UAAUUCUUCUCUUCUCUUUUGCAGGUGUUCACGCCAACAUCUCGAGCAAUAUUUAUCGCGGCGCCGGCGGCAGCCAGGCGCAGGCAUUGAGCGCCAGC ...........-....................((.((((((((.(((.....(.(((..........))).)((((((((....))).))))).)))..)))))))).)) ( -35.00) >DroPse_CAF1 1982 110 + 1 AAUGGUCUCUGAUGAUGCUCCCCCGCUCCUUUGCAGGUGUUCACGCCAACAUCUCGAGCAGCAUUUAUCGCGGGGCUGGCGGUAGCCAGGCCCAGGCUCUCAGCGCCAGA ..(((.(.((((.((((.......((......)).((((....))))..))))..((((.((.......))(((.(((((....))))).)))..)))))))).)))).. ( -43.90) >DroGri_CAF1 2045 101 + 1 UUUGUGC-----UAAUUAUUCCCUGCG----CGUAGGUGUUCAUGCCAACAUUUCGAGCAACAUUUAUCGUGGUGCGGGUGGCAGCCAGGCGCAGGCUCUCAGCGCCAAC ...((((-----(........((((((----(.(.(((.....((((..(((..(((..........)))..)))..))))...)))).))))))).....))))).... ( -33.52) >DroEre_CAF1 1984 103 + 1 ACUAUAUUUACAUCAUUUA-------UAUUUCAUAGGUGUUCGCGCCAACAUCUCGAGCAGCAUUUAUCGUGGCGCUGGUGGCAGCCAAGCCCAGGCGCUCAACGCCAAC ...................-------.........((((((.(((((.......(((..........)))(((.((((((....))).)))))))))))..))))))... ( -29.60) >DroPer_CAF1 1320 110 + 1 AAUGGUCUCUGAUGAUGCUCCCCCGCUCCUUUGCAGGUGUUCACGCCAACAUCUCGAGCAGCAUUUAUCGCGGGGCUGGCGGUAGCCAGGCCCAGGCUCUCAGCGCCAGA ..(((.(.((((.((((.......((......)).((((....))))..))))..((((.((.......))(((.(((((....))))).)))..)))))))).)))).. ( -43.90) >consensus AAUAUACUCAGAUAAUUCU_CCC_GCUCUUUUGCAGGUGUUCACGCCAACAUCUCGAGCAGCAUUUAUCGCGGCGCUGGCGGCAGCCAGGCCCAGGCUCUCAGCGCCAAC ...................................((((((...(((.....(.(((..........))).)((((((((....))).))))).)))....))))))... (-23.45 = -22.48 + -0.97)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:49:09 2006