Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 9,531,922 – 9,532,013 |
Length | 91 |
Max. P | 0.975322 |
Location | 9,531,922 – 9,532,013 |
---|---|
Length | 91 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 75.92 |
Mean single sequence MFE | -26.22 |
Consensus MFE | -13.18 |
Energy contribution | -13.73 |
Covariance contribution | 0.56 |
Combinations/Pair | 1.11 |
Mean z-score | -2.49 |
Structure conservation index | 0.50 |
SVM decision value | 1.75 |
SVM RNA-class probability | 0.975322 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 9531922 91 + 22407834 -----GGGUAAAAUU-UAUAUUUGGCAAUUGGCCAGAAGAGAGACA----ACAUAAGUAACCCA----AAAAAGUUGGCUUUUUCGUCAUUC--------------UUUUUAUCC-UGGG -----((((((((..-....((((((.....))))))((((.(((.----....(((((((...----.....))).))))....))).)))--------------)))))))))-.... ( -21.00) >DroSec_CAF1 39315 91 + 1 -----GGGUAAAAUU-UAUAUUUGGCAAUUGGCCAGAAGAGUGGCA----AAGUAAGUAAACCA----AAAAAGUUGGCUUUUUCGUCAUUC--------------UUUUUAUCC-UGGG -----((((((((..-....((((((.....))))))((((((((.----(((.((((.(((..----.....))).))))))).)))))))--------------)))))))))-.... ( -26.60) >DroSim_CAF1 42444 95 + 1 -----GGGUAAAAUU-UAUAUUUGGCAAUUGGCCAGAAGAGUGGCAAGUAAAGUAAGUAAACCA----AAAAAGUUGGCUUUUUCGUCAUUC--------------UUUUUAUCC-UGGG -----((((((((..-....((((((.....))))))((((((((....(((((.....(((..----.....))).)))))...)))))))--------------)))))))))-.... ( -25.40) >DroEre_CAF1 43232 100 + 1 -----GGGUAGAAUA-UGUAUUUGGCAAUUGGCCAGAAGCGAAGCA----AAAUAAGUAAGCCA----AAAAAGUUGGCUCAUUCGUCAUUCCUCU-----GCUUCUUUUCAUCC-UGGU -----((((.(((..-.((.((((((.....)))))).))((((((----..(..(((.(((((----(.....)))))).)))..)........)-----)))))..)))))))-.... ( -26.10) >DroYak_CAF1 47289 93 + 1 -----GGGUAAAAUU-UGUAUUUGGCAAUUGGCCAGAAGCGAAGCA----AAA-AAAUAAGCCAACAUAAAAAGUUGGCUUUUUCGUCAUUC---------------UUUUAUCC-UGGG -----((((((((((-(((.((((((.....)))))).)))))...----...-....((((((((.......))))))))...........---------------))))))))-.... ( -28.80) >DroPer_CAF1 41914 111 + 1 CACAGGGGCAACAUUGUGUUUUUGGCAAUUGGCCAAAGAAAUGGCCA-UAAAAUAAG---GCCA----CAAAAGUUGGCUAUUUCAUCAUCCAUCUAUCCAGCCUC-UUUCAUCCAUGGA ...((((((...........((((((.....))))))((((((((((-.........---....----.......))))))))))................)))))-)............ ( -29.45) >consensus _____GGGUAAAAUU_UAUAUUUGGCAAUUGGCCAGAAGAGAGGCA____AAAUAAGUAAGCCA____AAAAAGUUGGCUUUUUCGUCAUUC______________UUUUUAUCC_UGGG .....((((((((.......((((((.....))))))......................................((((......))))..................))))))))..... (-13.18 = -13.73 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:49:05 2006