| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 9,529,149 – 9,529,268 |
| Length | 119 |
| Max. P | 0.635501 |
| Location | 9,529,149 – 9,529,268 |
|---|---|
| Length | 119 |
| Sequences | 4 |
| Columns | 119 |
| Reading direction | forward |
| Mean pairwise identity | 76.26 |
| Mean single sequence MFE | -29.70 |
| Consensus MFE | -16.09 |
| Energy contribution | -17.28 |
| Covariance contribution | 1.19 |
| Combinations/Pair | 1.09 |
| Mean z-score | -1.96 |
| Structure conservation index | 0.54 |
| SVM decision value | 0.21 |
| SVM RNA-class probability | 0.635501 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 9529149 119 + 22407834 CUGUAGAAAGUUCUAAAGGAAAUCCAGAAGUAAAACCGGCAGGAAUCCCUGAAAGCAAACCAGGAGGUAGUUCUGUCGGAGCUGCUGCAGAAAGUGCUGAUAAAAAACCAAUAGAAAGU ((((((..(((((....((....))...........(((((((((((((((.........)))).)))..))))))))))))).))))))............................. ( -30.50) >DroSec_CAF1 36718 100 + 1 -------------------AAAUCCUGAAGUAAAACCGGCAGGAAUUUCUGAGAGCAAACCAGGAGGUAGUUCUGUCGUAGCUGCUGCAGGAAGUCCUGAUAAGAAACCAAUAGAAAGU -------------------...(((((.((((....((((((((.((((((.(......)))))))....))))))))....)))).)))))........................... ( -25.70) >DroSim_CAF1 39828 100 + 1 -------------------AAAUCCUGAAGUAAAACCGGCAGGAAUUCCCGAGAGCAAACCAGGAGGUAGUUCUGUCGUAGCUGCUGCAGGAAGUCCUGAUAAGAAACCAAUAGAAAGU -------------------...(((((.((((....((((((((.((((.(.(......)).))))....))))))))....)))).)))))........................... ( -24.00) >DroEre_CAF1 40648 119 + 1 CUGGGGGAAGUCCUGAAGGAAAUGCUGGAGAAAAGCCAGCAGCAAGUCCUGAAAGCAAACCAGGUGGUAGUUCUAGCGGAGCAGCUGGAGGAAGUCCUGGACAAAAUCCUAUAGACAGU (((.((((....((..((((..((((((.......)))))).....))))...))....(((((......(((((((......))))))).....)))))......)))).)))..... ( -38.60) >consensus ___________________AAAUCCUGAAGUAAAACCGGCAGGAAUUCCUGAAAGCAAACCAGGAGGUAGUUCUGUCGGAGCUGCUGCAGGAAGUCCUGAUAAAAAACCAAUAGAAAGU ......................(((((..(......)..)))))...((((.........)))).((((((((.....)))))))).((((....)))).................... (-16.09 = -17.28 + 1.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:48:59 2006