Locus 3288

Sequence ID 2L_DroMel_CAF1
Location 9,528,686 – 9,528,785
Length 99
Max. P 0.805901
window5216

overview

Window 6

Location 9,528,686 – 9,528,785
Length 99
Sequences 3
Columns 108
Reading direction forward
Mean pairwise identity 84.88
Mean single sequence MFE -37.90
Consensus MFE -26.97
Energy contribution -28.53
Covariance contribution 1.57
Combinations/Pair 1.14
Mean z-score -2.37
Structure conservation index 0.71
SVM decision value 0.63
SVM RNA-class probability 0.805901
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 9528686 99 + 22407834
---------AGCUUACCUGGGUCGCCGUGGAACUCGCCUGUGGCAACACCUGGAAGAAAACCUGGAGGAAGUUCUGGUGGUGGCACUAAGGAAACUCUUGAAAGAAAG
---------......(((((((((((..((((((..((((((....)))(..(........)..)))).))))))...)))))).)).)))................. ( -28.60)
>DroSec_CAF1 36284 108 + 1
AAUCCUCCUGGCUUACCUGGGUCACCGUGGAACACGCCUGUGGGAAUACCGGGAAGAAAACCUGGAGUAAGUUCUGGCGGUGGCACUAAACAAAGUCUUGGAGGAAUG
..((((((.(((((...((((((((((((((((...((....))....(((((.......))))).....))))).)))))))).)))....)))))..))))))... ( -43.40)
>DroSim_CAF1 39397 108 + 1
AAUCCUCCGGGCUUACCUGGGUCACCGUGGAACACGCCUGUGGGAAUACCGGGAAGAAAACCUGGAGUAAGUUCUGGCGGUGGCACUAAAGAAAGUUUUGGAGGAAUG
..((((((((((((...((((((((((((((((...((....))....(((((.......))))).....))))).)))))))).)))....))).)))))))))... ( -41.70)
>consensus
AAUCCUCC_GGCUUACCUGGGUCACCGUGGAACACGCCUGUGGGAAUACCGGGAAGAAAACCUGGAGUAAGUUCUGGCGGUGGCACUAAAGAAAGUCUUGGAGGAAUG
..((((((.(((((...((((((((((((((((.....(((....)))(((((.......))))).....))))).)))))))).)))....))).)).))))))... (-26.97 = -28.53 +   1.57)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:48:51 2006