Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 9,527,910 – 9,528,012 |
Length | 102 |
Max. P | 0.998967 |
Location | 9,527,910 – 9,528,012 |
---|---|
Length | 102 |
Sequences | 5 |
Columns | 103 |
Reading direction | forward |
Mean pairwise identity | 92.41 |
Mean single sequence MFE | -40.34 |
Consensus MFE | -33.94 |
Energy contribution | -34.66 |
Covariance contribution | 0.72 |
Combinations/Pair | 1.11 |
Mean z-score | -2.85 |
Structure conservation index | 0.84 |
SVM decision value | 3.30 |
SVM RNA-class probability | 0.998967 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 9527910 102 + 22407834 GAUUUGAAUGUUUUGUUGUGCUUGGCAAGAUAUCUGGGUGGGUGGCUCGAAUACUUCGCGGAAGCCCCUUUCAUUUG-GGCCAAACCGAGCCAAACACCAGCA .......((((((((((......))))))))))...((((..(((((((........((....))(((........)-))......)))))))..)))).... ( -37.30) >DroSec_CAF1 35488 103 + 1 GAUUUGGGUGUUUUGUUGUGCUUGGCAAGACAUCUGGGUGGGUGGCUCGAACACUUCGCGGAAGCCCCUUUCAUUUGGGGCCAAACCGAGCCAAACACCAGCA .....((((((((((((......)))))))))))).((((..((((((((.....))..((..(((((........)))))....))))))))..)))).... ( -45.10) >DroSim_CAF1 38596 103 + 1 GAUUUGGGUGCUUUGUUGUGCUUGGCAAGACAUCUGGGUGGGUGGCUCGAACACUUCGCGGAAGCCCCUUUCAUUUGGGGCCAAACCGAGCCAAACACCAGCA .....(((((..(((((......)))))..))))).((((..((((((((.....))..((..(((((........)))))....))))))))..)))).... ( -40.60) >DroEre_CAF1 39242 93 + 1 GAUUUGGGUGUUUUGUUGUGCUUGGCAAGACAUCUGGGUGGGUGGCUUGAAUACUUCGCGGAAGCCCCUUUCAUUUG-GGCCAAUCCGAGCCAG--------- .(((..(((((((((((......)))))))))))..)))...(((((((........((....))(((........)-))......))))))).--------- ( -35.10) >DroYak_CAF1 43506 102 + 1 GAUUUGGGUGUUUUGUUGUGCUUGGCAAGACAUCUGGGUGGGUGGCUCGAAUACUUCGCGGAAGCCCCUUUCAUUUG-GGCCAAUCCGAGCCAAACACCAGCA .....((((((((((((......)))))))))))).((((..(((((((........((....))(((........)-))......)))))))..)))).... ( -43.60) >consensus GAUUUGGGUGUUUUGUUGUGCUUGGCAAGACAUCUGGGUGGGUGGCUCGAAUACUUCGCGGAAGCCCCUUUCAUUUG_GGCCAAACCGAGCCAAACACCAGCA .....((((((((((((......)))))))))))).((((..(((((((........((....))(((........).))......)))))))..)))).... (-33.94 = -34.66 + 0.72)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:48:50 2006