Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 9,527,614 – 9,527,707 |
Length | 93 |
Max. P | 0.806900 |
Location | 9,527,614 – 9,527,707 |
---|---|
Length | 93 |
Sequences | 6 |
Columns | 114 |
Reading direction | forward |
Mean pairwise identity | 80.73 |
Mean single sequence MFE | -25.37 |
Consensus MFE | -17.01 |
Energy contribution | -19.07 |
Covariance contribution | 2.06 |
Combinations/Pair | 1.17 |
Mean z-score | -1.91 |
Structure conservation index | 0.67 |
SVM decision value | 0.64 |
SVM RNA-class probability | 0.806900 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 9527614 93 + 22407834 UUUAAUGCACCGUUUCCCGCCACUCUUGGCACA---------------------UCUCACAUCUCAUUCGGUGACAUGUGACUUUUGGCGACUUGUGCAAUUAAGAGCAGUAAC ((((((((((.(((.((.((((....))))...---------------------..((((((.((((...)))).)))))).....)).)))..)))).))))))......... ( -24.20) >DroSec_CAF1 35196 93 + 1 AUUAAUGCACAGUUUCCCGCCACUCUUGGCACA---------------------UCUCGCAUCUCAUUCGGUGACAUGUGACUUUUGGCGACUUGUGCAAUUAAGAGCAGCAAC ..................((..(((((((((((---------------------..((((...((((..(....)..))))......))))..)))))...))))))..))... ( -26.50) >DroSim_CAF1 38304 93 + 1 AUUAAUGCACAGUUUCCCGCCACUCUUGGCACA---------------------UCUCGCAUCUCAUUCGGUGACAUGUGACUUUUGGCGACUUGUGCAAUUAAGAGCAGCAAC ..................((..(((((((((((---------------------..((((...((((..(....)..))))......))))..)))))...))))))..))... ( -26.50) >DroEre_CAF1 38900 93 + 1 AUUAAUGCACAGUUUCCCGCCACUCUUGGCACA---------------------GCUCACAUCUCGUUCGGUGACAUGUGACUUUUGGCGACUUGUGCAAUUAAGAGCAGCAGC .(((((((((((((.((.((((....))))..(---------------------(.((((((.(((.....))).))))))))...)).))).))))).))))).......... ( -25.70) >DroYak_CAF1 43209 114 + 1 AUUAAUGCACAGUUUCCCGCCACUCUUGGCACAUCUUACAUCGCACAUCUCACAUCUCACAUCUCGUUCGGUGACAUGUGACUUUUGGCGACUUGUGCAAUUAAGAGCAGCAAC .(((((((((((......((((....))))..........((((.((..((((((.((((..........)))).))))))....)))))).)))))).))))).......... ( -30.70) >DroAna_CAF1 38153 73 + 1 AUGAAUGCACCCUCGUCCCCCACUCG-----------------------------------------UCGCUGACAUGUGACUUUUGGCGACUUGUGCAAUUAAGAGCUGCAAC .....((((..(((......(((..(-----------------------------------------((((..(..........)..)))))..))).......))).)))).. ( -18.62) >consensus AUUAAUGCACAGUUUCCCGCCACUCUUGGCACA_____________________UCUCACAUCUCAUUCGGUGACAUGUGACUUUUGGCGACUUGUGCAAUUAAGAGCAGCAAC .....(((((((((.((.((((....))))..........................((((((.(((.....))).)))))).....)).))).))))))............... (-17.01 = -19.07 + 2.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:48:48 2006