Locus 3285

Sequence ID 2L_DroMel_CAF1
Location 9,512,678 – 9,512,784
Length 106
Max. P 0.602101
window5213

overview

Window 3

Location 9,512,678 – 9,512,784
Length 106
Sequences 4
Columns 107
Reading direction reverse
Mean pairwise identity 85.71
Mean single sequence MFE -14.57
Consensus MFE -12.79
Energy contribution -13.10
Covariance contribution 0.31
Combinations/Pair 1.05
Mean z-score -1.43
Structure conservation index 0.88
SVM decision value 0.14
SVM RNA-class probability 0.602101
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 9512678 106 - 22407834
AUUAUUCGCCCAGCUCACAACAAGAACAACAACAACAAAAAAGAAGCCACUUGGAAUAAAAGUGAAACUCACGCAACUUCGC-AACCCAAAUUGAAGUUGUGCUUUC
..........................................((((((((((.......)))))........(((((((((.-.........)))))))))))))). ( -16.70)
>DroSec_CAF1 20185 97 - 1
AUUAUUCGCCCAGCUAACAA---------CAAAAAUAAAAAAGAAGCCACUUGAAAUAAAAGUGAAACUCACGCAACUUCGC-AACCCAAAUUGAAGUUGUGUUUUC
....................---------..................(((((.......)))))......(((((((((((.-.........))))))))))).... ( -15.90)
>DroEre_CAF1 21949 92 - 1
AUUAUUCGCCCCGAGCAC--------------ACAAAAAAAAGAAGCCACUUGAAAUAAAAGUGAAACUCACGCAACUUCGC-AACCCAAAUUGAAGUAGUAUUUUC
.......((.....))..--------------........((((.((.((((.((......(((.....)))((......))-........)).)))).)).)))). (  -9.90)
>DroYak_CAF1 24731 100 - 1
AUUAUUCGCCCCGCUCACCAAA-------AAAAAAAAAAAAAGAAGCCACUUGAAAUAAAAGUGAAACUCACGCAACUUCGCUAACCCAAAUUGAAGUUGUGUUUUC
......................-------..................(((((.......)))))......(((((((((((...........))))))))))).... ( -15.80)
>consensus
AUUAUUCGCCCAGCUCACAA_________CAAAAAAAAAAAAGAAGCCACUUGAAAUAAAAGUGAAACUCACGCAACUUCGC_AACCCAAAUUGAAGUUGUGUUUUC
..........................................((((((((((.......)))))........(((((((((...........)))))))))))))). (-12.79 = -13.10 +   0.31)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:48:47 2006