Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 9,510,775 – 9,510,866 |
Length | 91 |
Max. P | 0.534110 |
Location | 9,510,775 – 9,510,866 |
---|---|
Length | 91 |
Sequences | 5 |
Columns | 103 |
Reading direction | reverse |
Mean pairwise identity | 76.72 |
Mean single sequence MFE | -24.49 |
Consensus MFE | -12.46 |
Energy contribution | -12.10 |
Covariance contribution | -0.36 |
Combinations/Pair | 1.35 |
Mean z-score | -1.76 |
Structure conservation index | 0.51 |
SVM decision value | 0.00 |
SVM RNA-class probability | 0.534110 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 9510775 91 - 22407834 CGCA--AGUGA-----UUUUUAUAAUACAUUUU-UAAAGCUGGC--CC-AUUGAAGCGAAGAAAGGG-CGGUGGGUGGAAAAGAAAACGCCCACGCGCACUGG .(((--(((((-----((.....))).))))).-....((..((--((-...............)))-).(((((((..........)))))))))))..... ( -24.36) >DroSec_CAF1 18369 93 - 1 CGCA--AGUGA-----UUUUUAUAAUACAUUUU-UAAAGUUGGUCCCCAAUUUAAGCGAAGAAAGGG-CGGUGGGUGGAAAAGA-AACGCCCACGCGCACUGG ((((--(((((-----((.....))).))))).-..(((((((...)))))))..))).....((.(-(((((((((.......-..))))))).))).)).. ( -27.20) >DroSim_CAF1 20830 92 - 1 CGCA--AGUGA-----UUUUUAUAAUACAUUUU-UAAAGUUUGUCCCC-AUUCAAGCGAAGAAAGGG-CGGUGGGUGGAAAAGA-AACGCCCACGCGCACUGG ....--(((..-----...........(.((((-(...(((((.....-...))))).))))).).(-(((((((((.......-..))))))).)))))).. ( -23.70) >DroEre_CAF1 19290 90 - 1 CGCA--AGUGA-----UUUUUAUGAUACAUUUU-UAAAGUUGGC--CC-AUUCAAGCGGGGAAAGGG-CGGUGGGCGGAAAAGA-AACGCCCACGCGCACUGG ((((--(((((-----((.....))).))))).-........((--((-.(((.......))).)))-).(((((((.......-..))))))))))...... ( -28.10) >DroWil_CAF1 92864 95 - 1 CGCAAAAGUGACUGCCUUUUGUUAAUCAAUUUUUUAAAAUUCAC--CC-ACUCA--CCUAGAACCAUCAGGUGAGUGCUUC--A-ACUACCCACACACAGACA .(((((((.(....))))))))......................--.(-(((((--(((.((....)))))))))))....--.-.................. ( -19.10) >consensus CGCA__AGUGA_____UUUUUAUAAUACAUUUU_UAAAGUUGGC__CC_AUUCAAGCGAAGAAAGGG_CGGUGGGUGGAAAAGA_AACGCCCACGCGCACUGG .......(((.......(((((.((......)).)))))...............................(((((((..........))))))).)))..... (-12.46 = -12.10 + -0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:48:47 2006