Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 9,502,893 – 9,502,988 |
Length | 95 |
Max. P | 0.678962 |
Location | 9,502,893 – 9,502,988 |
---|---|
Length | 95 |
Sequences | 4 |
Columns | 98 |
Reading direction | forward |
Mean pairwise identity | 91.32 |
Mean single sequence MFE | -23.12 |
Consensus MFE | -20.04 |
Energy contribution | -20.60 |
Covariance contribution | 0.56 |
Combinations/Pair | 1.05 |
Mean z-score | -1.52 |
Structure conservation index | 0.87 |
SVM decision value | 0.30 |
SVM RNA-class probability | 0.678962 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 9502893 95 + 22407834 UAUCGAUCGAGAGCUUGAAAUCUUGAAAAGCAGCUAGGAGGCCAACCAAAGAAAACAA---CGCAGGCCCACCCACCUGCAGCUUUUGGAGUAGCAAA ..((((.(....).))))...(((.((((((.(((....)))................---.(((((........))))).)))))).)))....... ( -23.00) >DroSec_CAF1 10554 95 + 1 UAUCGAUCGAGAACUUGAAAUCUUGAAAAGCAGCUAG---GCCAUCCAAAGAAAACAACGACGCAGGGCCACCCACCUGCAGCUUUUGGAGUAGCAAA ......((((((........))))))......((((.---.(((((....))..........(((((........)))))......)))..))))... ( -22.80) >DroSim_CAF1 13244 95 + 1 UAUCGAUCGAGAACUUGAAAUCUUGAAAAGCAGCUAG---GCCAUCCAAAGAAAACAACGACGCAGGGCCACCCACCUGCAGCUUUUGGAGUAGCAAA ......((((((........))))))......((((.---.(((((....))..........(((((........)))))......)))..))))... ( -22.80) >DroYak_CAF1 10985 92 + 1 UAUCGAUCGAGAAAUCGAAAUCUUGAAAAGCAGCUGG---GCAGCCCAAAGAAAACAA---CGCAGUGCCACCCACCUGCAGCUUUUGGAGUAGCAAA ......((((....))))...(((.((((((...(((---(...))))..........---.((((((.....)).)))).)))))).)))....... ( -23.90) >consensus UAUCGAUCGAGAACUUGAAAUCUUGAAAAGCAGCUAG___GCCAUCCAAAGAAAACAA___CGCAGGGCCACCCACCUGCAGCUUUUGGAGUAGCAAA ......((((....))))...(((.((((((.((......))....................(((((........))))).)))))).)))....... (-20.04 = -20.60 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:48:46 2006