| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 9,493,027 – 9,493,127 |
| Length | 100 |
| Max. P | 0.776444 |
| Location | 9,493,027 – 9,493,127 |
|---|---|
| Length | 100 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 77.31 |
| Mean single sequence MFE | -28.69 |
| Consensus MFE | -21.35 |
| Energy contribution | -21.97 |
| Covariance contribution | 0.61 |
| Combinations/Pair | 1.20 |
| Mean z-score | -1.17 |
| Structure conservation index | 0.74 |
| SVM decision value | 0.54 |
| SVM RNA-class probability | 0.776444 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 9493027 100 + 22407834 CAGGUCUUGGGGUCAUCUUCUCGGAAAUCCUGCACGUAGAUGAGGAAGUUCCGGAAGCGACGCUUCUCGAACAUACCUGC-AAGU-------------AAAG-UC-----ACAUUUAUAU (((((.((((((((..((((.(((((.((((.((......))))))..))))))))).)))....)))))....))))).-..((-------------(((.-..-----...))))).. ( -25.20) >DroVir_CAF1 955 107 + 1 CAGGUCUUUGGGUCAUCCUCUCUGAAGUCCUGCACAUAGAUCAGGAAGUUGCGGAAGCGCCGCUUUUCAAACAUACCUGC-A-G------AACA----AGCA-ACAAGCCAAAUUAACAA ((((.(((..((........))..))).))))...........((..(((((((.....))((...............))-.-.------....----.)))-))...)).......... ( -22.66) >DroPse_CAF1 942 101 + 1 CAGGUCUUUGGGUCCUCCUCCCUGAAGUCCUGCACAUAGAUGAGGAAGUUGCGGAAGCGACGCUUCUCGAACAUACCUAG-AACG-------------AAAGGAU-----ACAUCAAUUU ((((.(((..((........))..))).))))......((((((((.(((((....)))))..))))).......(((..-....-------------..)))..-----..)))..... ( -32.50) >DroWil_CAF1 63278 114 + 1 CAGGUCUUUGGAUCAUCUUCCCUGAAGUCCUGCACAUAGAUGAGGAAGUUGCGGAAGCGACGCUUCUCGAACAUACCUGGCAAGUGUGGAAAGGAAGUAAAA-AG-----AAAUUUGAUU ((((.(((((((......)))..)))).))))....(((((......(((((....)))))((((((....(((((.......)))))....))))))....-..-----..)))))... ( -31.70) >DroMoj_CAF1 25765 104 + 1 CAGGUCUUUGGGUCAUCCUCUCUGAAGUCCUGCACGUAGAUCAGGAAAUUGCGGAAGCGGCGCUUCUCGAACAUACCUGA-U-GU--G--AAUA----UAAA-AC-----AAAUUCAGAG ((((.(((..((........))..))).))))....((.((((((......(((((((...))))).))......)))))-)-.)--)--....----....-..-----.......... ( -27.60) >DroPer_CAF1 1179 101 + 1 CAGGUCUUUGGGUCCUCCUCCCUGAAGUCCUGCACAUAGAUGAGGAAGUUGCGGAAGCGACGCUUCUCGAACAUACCUAG-AACG-------------AAAGGAU-----ACAUCAAUUU ((((.(((..((........))..))).))))......((((((((.(((((....)))))..))))).......(((..-....-------------..)))..-----..)))..... ( -32.50) >consensus CAGGUCUUUGGGUCAUCCUCCCUGAAGUCCUGCACAUAGAUGAGGAAGUUGCGGAAGCGACGCUUCUCGAACAUACCUGG_AAGU_____________AAAA_AC_____AAAUUAAUAU ((((.(((..((........))..))).))))........((((((.(((((....)))))..))))))................................................... (-21.35 = -21.97 + 0.61)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:48:43 2006