Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 987,272 – 987,382 |
Length | 110 |
Max. P | 0.593639 |
Location | 987,272 – 987,382 |
---|---|
Length | 110 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 78.93 |
Mean single sequence MFE | -25.04 |
Consensus MFE | -12.71 |
Energy contribution | -13.21 |
Covariance contribution | 0.50 |
Combinations/Pair | 1.11 |
Mean z-score | -1.91 |
Structure conservation index | 0.51 |
SVM decision value | 0.12 |
SVM RNA-class probability | 0.593639 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 987272 110 + 22407834 AAUAAAUGCAUGUUUCAUGGCUCUGAAGCACUAAG--CACCGGUUGGCUUU------UAAUUUGUUCAAAAGCCAUGCUAUUGCGAAUGAAUCAUUAAAUCAAUGCUUGAAACAG--CAC ......(((.(((((((.(((..(((........(--((..((((((((((------(.........)))))))).)))..)))((.....))......)))..)))))))))))--)). ( -29.40) >DroSec_CAF1 108174 111 + 1 AACAAAUGCAUAUUUCAUGGCUCUGGAGCACUAAGCGCACUGGUUGGCUUU------UAAUUUGUUCAAAAGCCGUGCUAUUGCGAACGAAUCAUUAAAUCAAUGCUC-AAACAG--CAC ...................(((...(((((.....((((.(((((((((((------(.........)))))))).)))).))))...((.........))..)))))-....))--).. ( -25.50) >DroSim_CAF1 108786 111 + 1 AACAAAUGCAUAUUUCAUGGCUCUGGAGCACUAAGCGCACUGGUUGGCUUU------UAAUUUGUUCAAAAGCCGUGCUAUUGCGAAUGAAUCAUUGAAUCAAUGCUC-AAACAG--CAC ...................(((...(((((.....((((.(((((((((((------(.........)))))))).)))).))))..(((.((...)).))).)))))-....))--).. ( -27.30) >DroEre_CAF1 114276 115 + 1 AACAAAUGCAU-UUUCAUGGCUCUGGAGCACUAAG--CACUGGCUCGCUUUUCGCACUAAUUUGUUCAAAAGCCGUGCUAUU-CAGAUGCAUCACUAAAUCAACGCUC-AAGCGGCGCAC .....((((((-((..(((((.(..((((.(....--....)))))((((((.(.((......)).))))))).).))))).-.))))))))...........(((..-..)))...... ( -28.10) >DroYak_CAF1 114684 86 + 1 AACAAAUGCAUAUUUCAUGGCUCCAGAGCA------------------------------UUUGUUCAAAAGCCGCGACAUU-CAACUGAAUCAUUAAAUCAAUGCUC-AAACAA--CAC .......((((...((.(((((...((((.------------------------------...))))...))))).)).(((-(....))))..........))))..-......--... ( -14.90) >consensus AACAAAUGCAUAUUUCAUGGCUCUGGAGCACUAAG__CACUGGUUGGCUUU______UAAUUUGUUCAAAAGCCGUGCUAUUGCGAAUGAAUCAUUAAAUCAAUGCUC_AAACAG__CAC ......((((.....(((((((...(((((...........((....)).............)))))...)))))))....))))................................... (-12.71 = -13.21 + 0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:33:06 2006