Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 9,489,259 – 9,489,371 |
Length | 112 |
Max. P | 0.684781 |
Location | 9,489,259 – 9,489,371 |
---|---|
Length | 112 |
Sequences | 6 |
Columns | 119 |
Reading direction | forward |
Mean pairwise identity | 81.51 |
Mean single sequence MFE | -28.80 |
Consensus MFE | -22.35 |
Energy contribution | -23.80 |
Covariance contribution | 1.45 |
Combinations/Pair | 1.11 |
Mean z-score | -1.47 |
Structure conservation index | 0.78 |
SVM decision value | 0.31 |
SVM RNA-class probability | 0.684781 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 9489259 112 + 22407834 CCCCAAC-------CCGCUGUUGUAUGUGACUUGCAUGCGGCGCUGAGCGCCAAAGUUUUGACUUCAAUUUGCCCAGUUACAAAUUUUGGUCUUCUCCGGCGGUUUUUCUACGCUUUUU .......-------((((((((((((((.....)))))))))(..(((.(((((((((((((((...........))))).)))))))))).)))..))))))................ ( -32.10) >DroPse_CAF1 46099 99 + 1 ------CUG-----CUGCUGCUGUAUGUGACUUGCAUGCUGCGCUGAGCGCCAAAGUUUUGACUUCAAUUUGCCCAGUUACAAAUUUU-GUCUUCUC--------UCUCCCCGGUUUUU ------..(-----((((.((.((((((.....)))))).))))..)))(.(((((((((((((...........))))).)))))))-).).....--------.............. ( -19.20) >DroSec_CAF1 47108 114 + 1 CCCCACCCC-----CCGCUGUUGUAUGUGACUUGCAUGCGGCGCUGAGCGCCAAAGUUUUGACUUCAAUUUGCCCAGUUACAAAUUUUGGUCUUCUCCGGCGGUUUUUCUACGCUUUUU .........-----((((((((((((((.....)))))))))(..(((.(((((((((((((((...........))))).)))))))))).)))..))))))................ ( -32.10) >DroEre_CAF1 47792 114 + 1 GCCCACCCC-----CCGCUGUUGUAUGUGACUUGCAUGCGGCGCUGAGCGCCAAAGUUUUGACUUCAAUUUGCCCAGUUACAAAUUUUGGUCUUCUCCGGCGGUUUUUCUCCGCUUUUU .........-----((((((((((((((.....)))))))))(..(((.(((((((((((((((...........))))).)))))))))).)))..))))))................ ( -32.10) >DroYak_CAF1 48840 108 + 1 GC----CCC-----CCGCUGUUGUAUGUGACUUGCAUGCGGCGCUGAGCGCCAAAGUUUUGACUUCAAUUUGCC--GUUACAAAUUUCGGUCUUCUCCGGCGGUUUUUCUUCGCUUUUU ..----...-----((((((..((((((.....))))))(((((...)))))........((((..((((((..--....))))))..)))).....))))))................ ( -30.90) >DroAna_CAF1 65198 109 + 1 GCCUUCCCUCUAUCAGGCCAAUGUAUGUGACUUGCAUGCUGCGACCAGCGCCAAAGUUUUGACUUCAAUUUGCCCAGUUACAAAUUU-GGU-----CUGGCUGUUUUUCCU----UCCA ............(((((((((....(((((((.(((.((((....))))....((((....)))).....)))..)))))))...))-)))-----))))...........----.... ( -26.40) >consensus GCCCACCCC_____CCGCUGUUGUAUGUGACUUGCAUGCGGCGCUGAGCGCCAAAGUUUUGACUUCAAUUUGCCCAGUUACAAAUUUUGGUCUUCUCCGGCGGUUUUUCUACGCUUUUU ..............((((((..((((((.....))))))(((((...)))))........((((..((((((........))))))..)))).....))))))................ (-22.35 = -23.80 + 1.45)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:48:40 2006