Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 9,487,455 – 9,487,557 |
Length | 102 |
Max. P | 0.997262 |
Location | 9,487,455 – 9,487,557 |
---|---|
Length | 102 |
Sequences | 5 |
Columns | 117 |
Reading direction | forward |
Mean pairwise identity | 79.07 |
Mean single sequence MFE | -30.78 |
Consensus MFE | -19.38 |
Energy contribution | -20.06 |
Covariance contribution | 0.68 |
Combinations/Pair | 1.26 |
Mean z-score | -2.98 |
Structure conservation index | 0.63 |
SVM decision value | 2.83 |
SVM RNA-class probability | 0.997262 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 9487455 102 + 22407834 ------CGCAGACAGACACAUAAACACACAUAAAGCCAGACGU-UCACACAUGUGAAGAAAUGGCCACAGU----UAUA----AUGCUUGACACAUAAAAAGUGUGGGCGUGUGUUA ------........(((((((...(((((.....((((....(-((((....)))))....))))....((----((..----.....)))).........)))))...))))))). ( -28.70) >DroSec_CAF1 45144 102 + 1 ------CGCAGACAGACACAUAAACACACAUAAAGCCAGACGU-UCACACAUGUGAAGAAAUGGCCGCAGU----UAUA----AUGCUUGACACAUAAAAAGUGUGGGCGUGUGUUA ------........(((((((...(((((.....((((....(-((((....)))))....)))).(((..----....----.)))..............)))))...))))))). ( -29.30) >DroEre_CAF1 45977 102 + 1 ------CGCAGACAGACACAUAAACACACAUAAAGCCAGACGU-UCACACAUGUGAAGAAAUGGCCACAGU----UAUA----AUGCUUGACACAUAAAAAGUGUGGGCGUGUGUUA ------........(((((((...(((((.....((((....(-((((....)))))....))))....((----((..----.....)))).........)))))...))))))). ( -28.70) >DroYak_CAF1 46774 102 + 1 ------CGCAGACAGACACAUAAACACACAUAAAGCCAGACGU-UCACACAUGUGAAGAAAUGGCCACAGU----UAUA----AUGCUUGACACAUAAAAAGUGUGGGCGUGUGUUA ------........(((((((...(((((.....((((....(-((((....)))))....))))....((----((..----.....)))).........)))))...))))))). ( -28.70) >DroAna_CAF1 63521 109 + 1 GGCAGCAGCAGACAGGCACAAAAAUAUACACACACCAGCACACACCACACAUGUGUGGGAGUGCACG-AGUGCGUGUGAGUGCAUGCGUGAGUUG----GAGAGCGGGUGUGUG--- .......((......))...........((((((((.((.(((.(((((....)))))..)))((((-.(((((......))))).)))).....----....)).))))))))--- ( -38.50) >consensus ______CGCAGACAGACACAUAAACACACAUAAAGCCAGACGU_UCACACAUGUGAAGAAAUGGCCACAGU____UAUA____AUGCUUGACACAUAAAAAGUGUGGGCGUGUGUUA ......................(((((((.....((((......((((....)))).....))))....................((((.((((.......))))))))))))))). (-19.38 = -20.06 + 0.68)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:48:38 2006