Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 9,487,349 – 9,487,440 |
Length | 91 |
Max. P | 0.742831 |
Location | 9,487,349 – 9,487,440 |
---|---|
Length | 91 |
Sequences | 6 |
Columns | 115 |
Reading direction | reverse |
Mean pairwise identity | 77.35 |
Mean single sequence MFE | -25.33 |
Consensus MFE | -16.76 |
Energy contribution | -17.15 |
Covariance contribution | 0.39 |
Combinations/Pair | 1.05 |
Mean z-score | -1.39 |
Structure conservation index | 0.66 |
SVM decision value | 0.45 |
SVM RNA-class probability | 0.742831 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 9487349 91 - 22407834 ACUUUUGCUGUGUUGCAUAUUUUGUGCAGAUUAAUUAAAUUGCUGGCAUGAAGCCGGUAACCAAA-----------UGGUCUGGUGGAAGGCAAGG-------GGCUAA------ ......(((.(.((((...(((..(.(((((((.((...((((((((.....))))))))..)).-----------))))))))..))).))))).-------)))...------ ( -27.00) >DroSec_CAF1 45031 98 - 1 ACUUUUGCUGUGUUGCAUAUUUUGUGCAGAUUAAUUAAAUUGCUGGCAUGAAGCCGGUAACCAAA-----------UGGGCGGGUUGUAGGCAAGGGGGGCGGGGCUAA------ ..(((((((.(.((((.(((..(.(((............((((((((.....))))))))((...-----------.))))).)..))).)))).).).))))))....------ ( -27.10) >DroEre_CAF1 45878 84 - 1 ACUUUUGCUGUGUUGCAUAUUUUGUGCAGAUUAAUUAAAUUGCUGGCAUGAAGCCGGUAACCAAA-----------UGGGCUGGUGGGCGGCAA--------------A------ ...((((((((.((((((.....))))))...........(((((((.....)))))))((((..-----------.....))))..)))))))--------------)------ ( -26.40) >DroWil_CAF1 68096 95 - 1 ACUUUUGCUGUGUUGCAUAUUUUGUGCAGAUUAAUUAAAUUGCUGGCAUGAAGGCGGUAACGAGGGACGUUUAGUUUGGCCUAGGGGAGGGCAA--------------A------ ...((((((.((((((...(((..(((.((((.....))))....)))..)))...)))))......(.(((((......))))).)).)))))--------------)------ ( -21.90) >DroYak_CAF1 46675 84 - 1 ACUUUUGCUGUGUUGCAUAUUUUGUGCAGAUUAAUUAAAUUGCUGGCAUGAAGCCGGUAACGAAA-----------UGGUCGGGUAGGCGUUAA--------------A------ ((.((((((....(((((.....)))))(((((.((...((((((((.....))))))))..)).-----------))))).)))))).))...--------------.------ ( -22.10) >DroAna_CAF1 63380 102 - 1 ACUUUUGCUGUGUUGCAUAUUUUGUGCAGAUUAAUUAAAUUGCUGGCAUGAAGCCGGUAACCAAA-----------AAAGGCGGC-GGCGG-AAUGAGGGCGGGGUGAAGUGCGA ..(((((((((.((((((.....))))))..........((((((((.....)))))))).....-----------.......))-)))))-))...(.((........)).).. ( -27.50) >consensus ACUUUUGCUGUGUUGCAUAUUUUGUGCAGAUUAAUUAAAUUGCUGGCAUGAAGCCGGUAACCAAA___________UGGGCUGGUGGGCGGCAA______________A______ ....(((((...((((((.....))))))..........((((((((.....)))))))).............................)))))..................... (-16.76 = -17.15 + 0.39)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:48:37 2006