Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 9,484,069 – 9,484,189 |
Length | 120 |
Max. P | 0.631089 |
Location | 9,484,069 – 9,484,189 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 88.33 |
Mean single sequence MFE | -27.53 |
Consensus MFE | -25.70 |
Energy contribution | -26.26 |
Covariance contribution | 0.56 |
Combinations/Pair | 1.13 |
Mean z-score | -1.32 |
Structure conservation index | 0.93 |
SVM decision value | 0.20 |
SVM RNA-class probability | 0.631089 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 9484069 120 - 22407834 CCUGUAUGCCACUUCAAAAGUGCGGGGUAAUCGAAAAAAAGGGUAGCGUACGGAAUAUGCUCUAAUAUGUUAGAAAAUUGAAGAAAAUGCUGGCUUAGAGCCAAAAUAAAUACAGAUACC .((((((((.((((........(((.....))).......)))).)))))))).....(((((((...(((((...(((......))).))))))))))))................... ( -26.66) >DroEre_CAF1 42549 119 - 1 CCUGUACGCCACUCCAAAAGUGCGGGGUAAUCGAAA-AAAGGGUAGCGUGCGGAAUGCGCUCUAAUAUGGUAGAAAAUUGGAGAAAAUGCUGGCUUAGAGCUAAACUAAACAGAGCUGCC (((((((............)))))))..........-....((((((..((.....))(((((((..(((((...............)))))..))))))).............)))))) ( -30.46) >DroYak_CAF1 43188 120 - 1 CCUGUAUGCCACUUCAAAAGUGCGGGGUAAUCGAAAAAAAGGGUAGCGUACGGAAAAUGCUCUAAUAUGCUAGAAAAUUGAAGAAAAUGCAGGCAAAGAGCUAAAGCAAAUACAAAUGCC .((((((((.((((........(((.....))).......)))).)))))))).....(((((....((((.(...(((......))).).)))).)))))....(((........))). ( -25.46) >consensus CCUGUAUGCCACUUCAAAAGUGCGGGGUAAUCGAAAAAAAGGGUAGCGUACGGAAUAUGCUCUAAUAUGCUAGAAAAUUGAAGAAAAUGCUGGCUUAGAGCUAAAAUAAAUACAGAUGCC .((((((((.((((........(((.....))).......)))).)))))))).....(((((((...(((((...(((......))).))))))))))))................... (-25.70 = -26.26 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:48:35 2006