Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 9,475,647 – 9,475,755 |
Length | 108 |
Max. P | 0.693485 |
Location | 9,475,647 – 9,475,755 |
---|---|
Length | 108 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 85.20 |
Mean single sequence MFE | -28.85 |
Consensus MFE | -19.01 |
Energy contribution | -20.05 |
Covariance contribution | 1.04 |
Combinations/Pair | 1.13 |
Mean z-score | -2.07 |
Structure conservation index | 0.66 |
SVM decision value | 0.33 |
SVM RNA-class probability | 0.693485 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 9475647 108 + 22407834 ---GGGGGACAGCCC-GAGGCUAGCGAAAUGCUAGCUAAAUGUU--------ACGAAAACAACAAAAUGUUUGUGCAUUAUUUACGCGUUGCUGGCAUUUUAUGCUAAUAAAUUACCAAU ---(((((....)))-.....(((((((((((((((....((((--------.....))))....(((((....)))))...........)))))))))))..))))........))... ( -28.00) >DroPse_CAF1 40813 112 + 1 CCCGGGGGA--------GGGUUGGCAAAAUGUUAGCAGAAUGUUCUUUUGGCAAAACAACAACAAAAUGUUUUUGCAUUAUUUACGCGUUGCUGGCAUUUUAUGCUAAUAAAUUACCAAU ....((..(--------..(((((((((((((((((((..(((.......((((((..(((......))))))))).......)))..))))))))))))..)))))))...)..))... ( -32.84) >DroSim_CAF1 40012 108 + 1 ---GGGGGACAGCCC-GAGGCUAGCGAAAUGCUAGCUAAAUGUU--------ACGAAAACAACAAAAUGUUUGUGCAUUAUUUACGCGUUGCUGGCAUUUUAUGCUAAUAAAUUACCAAU ---(((((....)))-.....(((((((((((((((....((((--------.....))))....(((((....)))))...........)))))))))))..))))........))... ( -28.00) >DroYak_CAF1 41435 108 + 1 ---GGGGGACAGCCC-GAGGCAAGCGAAAUACUAGCUAAAUGUU--------ACGAAAACAACAAAAUGUUUGUGCAUUAUUUACGCGUUGCUGGCAUUUUAUGCUAAUAAAUUACCAAU ---(((((....)))-..(((((((((((((...((((((((((--------.............)))))))).))..))))).))).)))))(((((...))))).........))... ( -23.22) >DroAna_CAF1 59098 109 + 1 ---GAGUGCCUGCCUGGAGGUUAGCAAAAUGUUAGCUAAAUGUU--------GGGAAAACAACAAAAUGUUUGUGCAUUAUUUACGGGUUCCUGGCAUUUUAUGCUAAUAAAUUACCAAU ---...(((..(((....)))..)))...(((((((.((((((.--------.((((..(.....(((((....)))))......)..))))..))))))...))))))).......... ( -32.20) >consensus ___GGGGGACAGCCC_GAGGCUAGCGAAAUGCUAGCUAAAUGUU________ACGAAAACAACAAAAUGUUUGUGCAUUAUUUACGCGUUGCUGGCAUUUUAUGCUAAUAAAUUACCAAU ...((......(((....)))(((((((((((((((..(((((.............(((((......))))).............)))))))))))))))..)))))........))... (-19.01 = -20.05 + 1.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:48:29 2006