Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 9,464,668 – 9,464,768 |
Length | 100 |
Max. P | 0.696038 |
Location | 9,464,668 – 9,464,768 |
---|---|
Length | 100 |
Sequences | 5 |
Columns | 104 |
Reading direction | forward |
Mean pairwise identity | 83.85 |
Mean single sequence MFE | -19.84 |
Consensus MFE | -14.34 |
Energy contribution | -15.22 |
Covariance contribution | 0.88 |
Combinations/Pair | 1.11 |
Mean z-score | -1.78 |
Structure conservation index | 0.72 |
SVM decision value | 0.34 |
SVM RNA-class probability | 0.696038 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 9464668 100 + 22407834 AAAUUUUCUACAGCGAAAUUUCUAAUAUUU-UUCGACCAUAGCUUCGAAAAUGGUGUCCCUUGCAAAAUGGUUUUC---GAAUGAUAGAAUUUUGCAUUUCAUU ............((((((((.(((.(((((-...((((((.((...((........))....))...))))))...---))))).)))))))))))........ ( -18.10) >DroSec_CAF1 29485 95 + 1 AAAUUUUCUACAGCGAAAUUUCUAUUAUUUUUUCGACCAUAGCUUCGAAAAUGGUGUCCCUUGCAAAAUGUUUUUCGGCGAAUAAUAGAAUUUCG--------- .............(((((((.(((((((((((((((........)))))).....(((....((.....)).....)))))))))))))))))))--------- ( -18.30) >DroSim_CAF1 29313 95 + 1 AAAUUUUCUACAGCGAAAUUUCUAUUAUUUUUUCGACCAUAGAUUCGAAAAUGGUGUCCAUUGCAAAAUGGUUUUCGGCGAAUAAUAGAAUUUCG--------- .............(((((((.(((((((((((((((........)))))).(((...(((((....)))))...)))..))))))))))))))))--------- ( -22.20) >DroEre_CAF1 29326 102 + 1 AAAUAUUCUACAGCGAAACUUCUAUUACUU-UUCGAACUUAGCUUCGAAAAUGGUGUCCUUCGCAAAAUGGAUUUCGGCAAAUAAUA-AAUUUCGCAUUUUAUU ............((((((....(((((.((-((((((......))))))))(((.((((..........)))).))).....)))))-..))))))........ ( -18.00) >DroYak_CAF1 29484 103 + 1 AAAUAUUCUACAGCGAAAAUUCUAUCACUU-UUCGAUCACAGCUUCGAAAAUGAUGUCCUUUGCAAAAUCGUUUUCGGCAAAUAAUAGAAUUUCGCAUUUCAUU ............((((((.((((((((.((-(((((........)))))))))).....(((((..((.....))..)))))...)))))))))))........ ( -22.60) >consensus AAAUUUUCUACAGCGAAAUUUCUAUUAUUU_UUCGACCAUAGCUUCGAAAAUGGUGUCCCUUGCAAAAUGGUUUUCGGCGAAUAAUAGAAUUUCGCAUUU_AUU ............((((((.(((((((((((.(((((........))))).((..(((.....)))..))..........)))))))))))))))))........ (-14.34 = -15.22 + 0.88)
Location | 9,464,668 – 9,464,768 |
---|---|
Length | 100 |
Sequences | 5 |
Columns | 104 |
Reading direction | reverse |
Mean pairwise identity | 83.85 |
Mean single sequence MFE | -20.81 |
Consensus MFE | -12.62 |
Energy contribution | -13.86 |
Covariance contribution | 1.24 |
Combinations/Pair | 1.08 |
Mean z-score | -1.90 |
Structure conservation index | 0.61 |
SVM decision value | -0.02 |
SVM RNA-class probability | 0.524384 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 9464668 100 - 22407834 AAUGAAAUGCAAAAUUCUAUCAUUC---GAAAACCAUUUUGCAAGGGACACCAUUUUCGAAGCUAUGGUCGAA-AAAUAUUAGAAAUUUCGCUGUAGAAAAUUU ..(((((((((((((....((....---)).....)))))))).((....))..)))))...((((((.((((-(...........)))))))))))....... ( -17.70) >DroSec_CAF1 29485 95 - 1 ---------CGAAAUUCUAUUAUUCGCCGAAAAACAUUUUGCAAGGGACACCAUUUUCGAAGCUAUGGUCGAAAAAAUAAUAGAAAUUUCGCUGUAGAAAAUUU ---------(((((((((((((((.((.(((.....))).))..((....)).(((((((........))))))))))))))).)))))))............. ( -19.60) >DroSim_CAF1 29313 95 - 1 ---------CGAAAUUCUAUUAUUCGCCGAAAACCAUUUUGCAAUGGACACCAUUUUCGAAUCUAUGGUCGAAAAAAUAAUAGAAAUUUCGCUGUAGAAAAUUU ---------(((((((((((((((.........(((((....)))))......(((((((........))))))))))))))).)))))))............. ( -20.30) >DroEre_CAF1 29326 102 - 1 AAUAAAAUGCGAAAUU-UAUUAUUUGCCGAAAUCCAUUUUGCGAAGGACACCAUUUUCGAAGCUAAGUUCGAA-AAGUAAUAGAAGUUUCGCUGUAGAAUAUUU ........((((((((-((((((((..((((..........((((((......))))))........))))..-))))))))..))))))))............ ( -20.37) >DroYak_CAF1 29484 103 - 1 AAUGAAAUGCGAAAUUCUAUUAUUUGCCGAAAACGAUUUUGCAAAGGACAUCAUUUUCGAAGCUGUGAUCGAA-AAGUGAUAGAAUUUUCGCUGUAGAAUAUUU ........(((((((((((((((((..(((..(((.(((((.(((........))).))))).)))..)))..-))))))))))).))))))............ ( -26.10) >consensus AAU_AAAUGCGAAAUUCUAUUAUUCGCCGAAAACCAUUUUGCAAAGGACACCAUUUUCGAAGCUAUGGUCGAA_AAAUAAUAGAAAUUUCGCUGUAGAAAAUUU ........((((((((((((((((.((.(((.....))).)).............(((((........)))))..)))))))))).))))))............ (-12.62 = -13.86 + 1.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:48:26 2006