Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 9,446,812 – 9,446,946 |
Length | 134 |
Max. P | 0.975646 |
Location | 9,446,812 – 9,446,911 |
---|---|
Length | 99 |
Sequences | 6 |
Columns | 106 |
Reading direction | forward |
Mean pairwise identity | 78.77 |
Mean single sequence MFE | -35.22 |
Consensus MFE | -20.40 |
Energy contribution | -20.98 |
Covariance contribution | 0.59 |
Combinations/Pair | 1.21 |
Mean z-score | -2.84 |
Structure conservation index | 0.58 |
SVM decision value | 1.75 |
SVM RNA-class probability | 0.975646 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 9446812 99 + 22407834 CAUUGUCAGCUGAGUGCCCAAGUGUGAAUGUGCAUGCA-------UUGGGUGUAAGCAGGCUCUUAAGUUUCUUUUAAGAGAGACUUGAGUUCAAGCAUUGCCAGA .........(((.(..((((((((((......))))).-------)))))..)..(((((((((((((((((((....))))))))))))....))).))))))). ( -34.90) >DroSec_CAF1 11290 106 + 1 CAUUGUUAGCUGAGUGCCCAAGUGUGAAUGUGCACAUGUGUGUACUUGGUUGUAAGCAGGCUCUUAAGUUUCUUUUAAGAGAGACUUGAGUUCAAGCAUUGCCAGA ......((((..(((((.((.(((((......))))).)).)))))..))))...(((((((((((((((((((....))))))))))))....))).)))).... ( -38.40) >DroSim_CAF1 11445 106 + 1 CAUUGUCAGCUGAGUGCCCAAGUGUGAAUGUGCAUGUGUGUGUACUUGGUUGUAAGCAGGCUCUUAAGUUUCUUUUAAGAGAGACUUGAGUUCAAGCAUUGCCAGC ..(((.((((..(((((.((.((((......))))...)).)))))..)))))))(((((((((((((((((((....))))))))))))....))).)))).... ( -37.80) >DroEre_CAF1 11676 106 + 1 CAUUGUCAGCUGAGUGCCCAAGUGUGAAUGUGCAUGUGUGUACUUGUGUGUGUAAGCAGGCUCUUAAGUUUCUUUUAAGAGAGACUUGAGUUCGAGCGUUGCCAGA ..(((.((((.((((((.((.((((......)))).)).))))))((.(((....))).)).((((((((((((....)))))))))))).......)))).))). ( -32.20) >DroYak_CAF1 11487 106 + 1 CAUUGUCAGCUGAGUGCCCAUGUGUGAAUGUGCAUGGGUACGCCUGUGUAUGUAAGCUGGCUCUUAAGUUUCUUUUAAGAGAGACUUGAGUUAAAGCGUUGCCAGA ..(((.((((...(((((((((..(....)..)))))))))..............(((....((((((((((((....))))))))))))....))))))).))). ( -41.60) >DroAna_CAF1 10612 84 + 1 CAUUGCCGCUUGAGUGUC----UGUGAGUGUUCUC------------------GAGCAAGCUCUUAAGUUUUGUUUAAGAGAGGCCCCAGAGCCGGCGUUGCCAGC ((.(((((((((((...(----.......)..)))------------------))))...((((((((.....)))))))).(((......))))))).))..... ( -26.40) >consensus CAUUGUCAGCUGAGUGCCCAAGUGUGAAUGUGCAUGUGUGUG___UUGGGUGUAAGCAGGCUCUUAAGUUUCUUUUAAGAGAGACUUGAGUUCAAGCAUUGCCAGA .........(((.((((.((........)).))))....................(((((((((((((((((((....))))))))))))....))).))))))). (-20.40 = -20.98 + 0.59)
Location | 9,446,849 – 9,446,946 |
---|---|
Length | 97 |
Sequences | 6 |
Columns | 109 |
Reading direction | forward |
Mean pairwise identity | 77.85 |
Mean single sequence MFE | -25.73 |
Consensus MFE | -16.54 |
Energy contribution | -16.52 |
Covariance contribution | -0.02 |
Combinations/Pair | 1.26 |
Mean z-score | -1.59 |
Structure conservation index | 0.64 |
SVM decision value | 0.62 |
SVM RNA-class probability | 0.802097 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 9446849 97 + 22407834 A-------UUGGGUGUAAGCAGGCUCUUAAGUUUCUUUUAAGAGAGACUUGAGUUC-AAGCAUUGCCAGA--UU--AAAAACAUUUUUAAAAUUUUGUAACGGAAACAG .-------...((((...((..(..((((((((((((....))))))))))))..)-..))..))))...--((--((((....))))))...........(....).. ( -22.00) >DroSec_CAF1 11327 104 + 1 GUGUGUACUUGGUUGUAAGCAGGCUCUUAAGUUUCUUUUAAGAGAGACUUGAGUUC-AAGCAUUGCCAGA--UU--AAAAGCAUUUUUAAAAUUUUGUAACGGAAACAG ..((((..((((((....(((((((((((((((((((....))))))))))))...-.))).))))..))--))--))..)))).................(....).. ( -25.60) >DroSim_CAF1 11482 104 + 1 GUGUGUACUUGGUUGUAAGCAGGCUCUUAAGUUUCUUUUAAGAGAGACUUGAGUUC-AAGCAUUGCCAGC--UU--AAAAGCAUUUUUAAAAUUUUGUAACGGAAACAG ((((......(((((...(((((((((((((((((((....))))))))))))...-.))).))))))))--).--....)))).................(....).. ( -26.90) >DroEre_CAF1 11713 104 + 1 GUGUACUUGUGUGUGUAAGCAGGCUCUUAAGUUUCUUUUAAGAGAGACUUGAGUUC-GAGCGUUGCCAGA--GU--AAAAGCAUUUUUAAAAUUUUGUAACGGCAACAG (..(((....)))..)..((..(..((((((((((((....))))))))))))..)-..))((((((...--.(--((((............)))))....)))))).. ( -27.20) >DroYak_CAF1 11524 104 + 1 GUACGCCUGUGUAUGUAAGCUGGCUCUUAAGUUUCUUUUAAGAGAGACUUGAGUUA-AAGCGUUGCCAGA--AU--AAAAGCAUGUUUUAAAUAUUGUAACGGUUAGAG (((((....))))).....((((((((((((((((((....))))))))))))(((-((((((.((....--..--....)))))))))))..........)))))).. ( -26.80) >DroPer_CAF1 10893 108 + 1 GUGUGUAAACACAAGAGAGCAAGCUCUUAAGUUCUUGUUAAGAGUAUCUUGGGCCGGAGGCAUUGCCAGCCCUUAGAAAAGUGGUGUUUGAAUUUU-UAACCGACAUUU .....(((((((..((((....((((((((.......)))))))).))))((((.((........)).))))...........)))))))......-............ ( -25.90) >consensus GUGUGUACUUGGAUGUAAGCAGGCUCUUAAGUUUCUUUUAAGAGAGACUUGAGUUC_AAGCAUUGCCAGA__UU__AAAAGCAUUUUUAAAAUUUUGUAACGGAAACAG ..................(((((((((((((((((((....)))))))))))).....))).))))........................................... (-16.54 = -16.52 + -0.02)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:48:21 2006