Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 9,444,898 – 9,444,993 |
Length | 95 |
Max. P | 0.666844 |
Location | 9,444,898 – 9,444,993 |
---|---|
Length | 95 |
Sequences | 6 |
Columns | 104 |
Reading direction | reverse |
Mean pairwise identity | 71.57 |
Mean single sequence MFE | -25.83 |
Consensus MFE | -5.48 |
Energy contribution | -5.48 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.27 |
Mean z-score | -2.40 |
Structure conservation index | 0.21 |
SVM decision value | 0.28 |
SVM RNA-class probability | 0.666844 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 9444898 95 - 22407834 UGCAUUAAUGCAAUUCGCUUUUU--UUCUGGUUUGCA----CUCAAGCCCCCCCCCCCCCCCUCGAGACAUUCGUUUUUAUUUGG-GGAAAAGGGGCGAA--AA ((((....)))).((((((((((--(((.((((((..----..)))))).......(((.....(((((....))))).....))-))))))))))))))--.. ( -29.10) >DroPse_CAF1 9071 94 - 1 UGCAUUAAUGCAAUCAUUUUUUU--UUCUUCUUUCAGUUUUCUCUU-----UUCUCUCACUUUUUUCAC-UACAU-UU-CCCUGGAUGGAGAUGGGCGAAAAGA ((((....))))...........--.................((((-----(((.(((((((..((((.-.....-..-...))))..))).)))).))))))) ( -17.10) >DroSec_CAF1 9452 93 - 1 UGCAUUAAUGCAAUUCGUUUUUU--UUCUGGUUUGCA-------GAACGUCCGUUUUCCCCCUCGAGACGUCCGUUUUUAUUUGGGGGAAAAGGGGCGAA--AA ((((....))))...........--(((((.....))-------)))(((((.(((((((((..(((((....))))).....))))))))).)))))..--.. ( -34.80) >DroSim_CAF1 9643 94 - 1 UGCAUUAAUGCAAUUCGUUUUUUUGUUCUGGUUUGCA-------GAACGUCCGUUUUCCCCCUCGUGACGUCCGUUUUUAUUUGG-GGAAAAGGGGCGAA--AA ((((....)))).(((........((((((.....))-------))))((((.((((((((.....(((....))).......))-)))))).)))))))--.. ( -32.60) >DroEre_CAF1 9682 83 - 1 UGCAUUAAUGCAAUUCG-UU-UU--UUCUGGUUUCCA--------------CUCACUCCGCUUCGUGACGUCCGUUUUCAUUUGG-GGAAAAGGGGCGAA--AA ((((....)))).....-..-..--............--------------.((((........))))(((((.(((((......-.))))).)))))..--.. ( -18.10) >DroYak_CAF1 9584 89 - 1 UGCAUUAAUGCAAUUCGGUU-UU--UCCUGGUUUGCA----CUCAA-----CUCACUCCCCUUCGUGACGUCCGUUUUCAUUUGG-GGGAAAGGGCAAAA--GA (((.....(((((..(((..-..--..)))..)))))----.....-----.....((((((..((((.........))))..))-))))....)))...--.. ( -23.30) >consensus UGCAUUAAUGCAAUUCGUUUUUU__UUCUGGUUUGCA_______AA_____CUCUCUCCCCCUCGUGACGUCCGUUUUUAUUUGG_GGAAAAGGGGCGAA__AA ((((....))))...........................................................((.(((((........))))).))......... ( -5.48 = -5.48 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:48:19 2006