Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 9,428,296 – 9,428,390 |
Length | 94 |
Max. P | 0.995764 |
Location | 9,428,296 – 9,428,390 |
---|---|
Length | 94 |
Sequences | 6 |
Columns | 113 |
Reading direction | reverse |
Mean pairwise identity | 69.87 |
Mean single sequence MFE | -23.19 |
Consensus MFE | -9.87 |
Energy contribution | -11.42 |
Covariance contribution | 1.56 |
Combinations/Pair | 1.22 |
Mean z-score | -2.66 |
Structure conservation index | 0.43 |
SVM decision value | 2.61 |
SVM RNA-class probability | 0.995764 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 9428296 94 - 22407834 ----------AAUACA------CUAUUUCUCGCAGCCUUUUCGAACUUUCGAUUCGGUUUUCUUCCUAACCUAAUCAUCUCUCUUAAAAUUAGAGCCUUAU---GAGAGGGCU ----------......------...........((((((((((.......((((.((((........)))).))))....((((.......)))).....)---))))))))) ( -21.90) >DroSec_CAF1 56999 97 - 1 ----------AAUACA------GCAUUUCUCGCAGCCUUUUCGAACUUUCGAUUCGGUUUUCUUCCUAACCUGAUCAUCUCUCUUAGAAUGACAGCCUUAUAGAGAGAGGGCU ----------......------((.......))(((((............((((.((((........)))).)))).(((((((.((.........))...)))))))))))) ( -22.80) >DroSim_CAF1 59449 97 - 1 ----------AUUACA------GCAUUUAUCGCAGCCUUUUCGAACUUUCGAUUCGGUUUUCUUCCUAACCUGAUCAUCUCUCUUAGAAUGACAGCCUUAUAGAGAAAGGGCU ----------......------((.......))(((((((((........((((.((((........)))).)))).(((.....)))................))))))))) ( -20.50) >DroEre_CAF1 57277 99 - 1 GGAGA-----CUAUUA------GCUUUUCUUGCAGCCCUUUCGAAUUUUCGAUUGGGUUGUCUUCCCAACCUAAUCAUCUCCCUCAAAAUGACAGCCUUGUA---AAAAGGCU (((((-----..((((------(........(((((((..((((....))))..))))))).........)))))..)))))...........((((((...---..)))))) ( -33.43) >DroYak_CAF1 60522 110 - 1 AUACAUCUCAUUAAUAGGCUGCGCAUUUCUUGCAGCCUUUUCGAACUUUCGAUUCGGUUGUCUUCCCAACCUAAUCAUCUCUCUUAAAAUGACCGCCUUAUA---GAAGGGCU .......(((((...((((((((.......))))))))............((((.(((((......))))).))))...........)))))..(((((...---..))))). ( -29.60) >DroAna_CAF1 58479 81 - 1 ------------------------UUCUUUAGCAGCCCGUUCGAACUCUUUUGUAGGUUGUCUCCCCAGUCGUUCCAUUUCCCUGAGUAUUACUGCCUUGAA--------GUU ------------------------..(((((((((((....((((....))))..)))))).....((((.((.(((......)).).)).))))...))))--------).. ( -10.90) >consensus __________AUUACA______GCAUUUCUCGCAGCCUUUUCGAACUUUCGAUUCGGUUGUCUUCCCAACCUAAUCAUCUCUCUUAAAAUGACAGCCUUAUA___AAAGGGCU .................................(((((((((((....))))...(((((((............................))))))).........))))))) ( -9.87 = -11.42 + 1.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:48:18 2006