Locus 3262

Sequence ID 2L_DroMel_CAF1
Location 9,426,623 – 9,426,722
Length 99
Max. P 0.923073
window5180

overview

Window 0

Location 9,426,623 – 9,426,722
Length 99
Sequences 5
Columns 110
Reading direction forward
Mean pairwise identity 85.30
Mean single sequence MFE -34.60
Consensus MFE -26.64
Energy contribution -26.80
Covariance contribution 0.16
Combinations/Pair 1.14
Mean z-score -2.17
Structure conservation index 0.77
SVM decision value 1.15
SVM RNA-class probability 0.923073
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 9426623 99 + 22407834
AGCUGUCUUAUCUGGUCCCUUCUGGCAACAGCUGGCU----------ACGGUCUUGUUGUCGUCUUUUCCAACUCAAAAUAUCAGGAAUGGACAGGGACCUGAUCUU-CA
.........(((.(((((((...((((((((..(((.----------...)))))))))))((((.((((..............)))).))))))))))).)))...-.. ( -36.04)
>DroSec_CAF1 55297 99 + 1
GGCUGCCUUAUCUGGUCGCUACUGGCAACAGCUGGUG----------GCGGUCAUGUUGUCGUCUUUUCCAACUCAAAGUAUCAGGAAUGGACAGGGACCUGAUCUU-CA
((...((((...((..((((((..((....))..)))----------)))..)).......((((.((((..............)))).)))))))).)).......-.. ( -34.04)
>DroSim_CAF1 57737 99 + 1
GGCUGUCUUAUCUGGUCGCUACUGGCAACAGCUGGUG----------GCGGUCUUGUUGUCGUCUUUUCCAACUCAAAGUAUCAGGAAUGGACAGGGACCUGAUCUU-CA
....(((((....(..((((((..((....))..)))----------)))..)........((((.((((..............)))).)))).)))))........-.. ( -32.04)
>DroEre_CAF1 55501 109 + 1
AGCCUUCUUAUCUGGUCCCUACUGGCAACAGCUGGCGGCAGCUGGAGAUGAUCUUGUUGUCGUCUUUUGCAACUGAAAAUAUCAGCAAUGUGCAGGGACCUGGUCCU-GA
.........(((.(((((((.(((....)))..(((((((((.(((.....))).)))))))))....(((.((((.....)))).....)))))))))).)))...-.. ( -39.40)
>DroYak_CAF1 58770 100 + 1
GGCUGUCUUAUCUGGUCCCUACUGGCAACAGCUGGCG----------ACGGUCUUGUUGUCGUCUUUUGCAACUGAAAGUAUCAACAAUGUGCAGGGACCUGAUCUUCCA
((..(....(((.(((((((...(((((((((((...----------.))))..))))))).......(((..(((.....)))......)))))))))).))))..)). ( -31.50)
>consensus
GGCUGUCUUAUCUGGUCCCUACUGGCAACAGCUGGCG__________ACGGUCUUGUUGUCGUCUUUUCCAACUCAAAGUAUCAGGAAUGGACAGGGACCUGAUCUU_CA
.........(((.(((((((...(((((((((((..............))))..)))))))((((.((((..............)))).))))))))))).)))...... (-26.64 = -26.80 +   0.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:48:16 2006