Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 9,411,125 – 9,411,227 |
Length | 102 |
Max. P | 0.987895 |
Location | 9,411,125 – 9,411,227 |
---|---|
Length | 102 |
Sequences | 6 |
Columns | 112 |
Reading direction | forward |
Mean pairwise identity | 91.58 |
Mean single sequence MFE | -25.77 |
Consensus MFE | -22.14 |
Energy contribution | -23.33 |
Covariance contribution | 1.19 |
Combinations/Pair | 1.04 |
Mean z-score | -2.81 |
Structure conservation index | 0.86 |
SVM decision value | 2.10 |
SVM RNA-class probability | 0.987895 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 9411125 102 + 22407834 UCGGCGAAUGUCCCUGCUGGCCUUUAAUUAAAAGCAAACAUGUUUGCCUGCA-AACCCAAGGCAAACACACCCACUC---------ACCCAUGGCAGUACAUUUUAUUUGCC ..((((((((....(((((.(((((.....))))......(((((((((...-......))))))))).........---------......).))))).....)))))))) ( -26.90) >DroSec_CAF1 39717 102 + 1 UCGGCGAAUGUCCCUGCUGGCCUUUAAUUAAAAGCAAACAUGUUUGCCUGCA-AACCCAAGGCAAACACACCCACUC---------ACCCAUGGCAGUACAUUUUAUUUGCC ..((((((((....(((((.(((((.....))))......(((((((((...-......))))))))).........---------......).))))).....)))))))) ( -26.90) >DroSim_CAF1 42274 102 + 1 UCGGCGAAUGUCCCUGCUGGCCUUUAAUUAAAAGCAAACAUGUUUGCCUGCA-AACCCAAGGCAAACACACCCACUC---------ACCCAUGGCAGUACAUUUUAUUUGCC ..((((((((....(((((.(((((.....))))......(((((((((...-......))))))))).........---------......).))))).....)))))))) ( -26.90) >DroEre_CAF1 40110 102 + 1 UCGGCGAAUGUCCCUGCUGGCCUUUAAUUAAAAGCAAACAUGUUUGCCUGCA-AACCCAAGGCAAACACACCCACUC---------AGCCAUGGCAGUACAUUUUAUUUGCC ..((((((((...((((((((((((.....))))......(((((((((...-......))))))))).........---------.)))..))))).......)))))))) ( -29.50) >DroYak_CAF1 41914 102 + 1 UGUGCGAAUGUCCCUGCUGGCCUUUAAUUAAAAGCAAACAUGUUUGCCUGCA-AACCCAAGGCAAACACACCCACUC---------ACCCAUGGCAGUACAUUUUAUUUGCC ...(((((((....(((((.(((((.....))))......(((((((((...-......))))))))).........---------......).))))).....))))))). ( -24.10) >DroAna_CAF1 42425 106 + 1 UC------UGUCCCUGCUGGCCUUUAAUUAAAAGCAAACAUGUUUGCCGGCAGAACCCAAGGCAAACACAUCCCCCCCGACACUCCUUCCAGAGCAGUACAUUUUAUUUGCC ..------.....((((((((..........(((((....))))))))))))).......((((((....((......))..(((......)))............)))))) ( -20.30) >consensus UCGGCGAAUGUCCCUGCUGGCCUUUAAUUAAAAGCAAACAUGUUUGCCUGCA_AACCCAAGGCAAACACACCCACUC_________ACCCAUGGCAGUACAUUUUAUUUGCC ..((((((((...(((((.((.(((....))).)).....(((((((((..........)))))))))........................))))).......)))))))) (-22.14 = -23.33 + 1.19)
Location | 9,411,125 – 9,411,227 |
---|---|
Length | 102 |
Sequences | 6 |
Columns | 112 |
Reading direction | reverse |
Mean pairwise identity | 91.58 |
Mean single sequence MFE | -37.40 |
Consensus MFE | -30.48 |
Energy contribution | -30.87 |
Covariance contribution | 0.39 |
Combinations/Pair | 1.07 |
Mean z-score | -3.32 |
Structure conservation index | 0.81 |
SVM decision value | 1.67 |
SVM RNA-class probability | 0.971314 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 9411125 102 - 22407834 GGCAAAUAAAAUGUACUGCCAUGGGU---------GAGUGGGUGUGUUUGCCUUGGGUU-UGCAGGCAAACAUGUUUGCUUUUAAUUAAAGGCCAGCAGGGACAUUCGCCGA ((((............))))...(((---------(((((..(.((((.(((((..(((-.(((((((....)))))))....)))..))))).)))).)..)))))))).. ( -39.40) >DroSec_CAF1 39717 102 - 1 GGCAAAUAAAAUGUACUGCCAUGGGU---------GAGUGGGUGUGUUUGCCUUGGGUU-UGCAGGCAAACAUGUUUGCUUUUAAUUAAAGGCCAGCAGGGACAUUCGCCGA ((((............))))...(((---------(((((..(.((((.(((((..(((-.(((((((....)))))))....)))..))))).)))).)..)))))))).. ( -39.40) >DroSim_CAF1 42274 102 - 1 GGCAAAUAAAAUGUACUGCCAUGGGU---------GAGUGGGUGUGUUUGCCUUGGGUU-UGCAGGCAAACAUGUUUGCUUUUAAUUAAAGGCCAGCAGGGACAUUCGCCGA ((((............))))...(((---------(((((..(.((((.(((((..(((-.(((((((....)))))))....)))..))))).)))).)..)))))))).. ( -39.40) >DroEre_CAF1 40110 102 - 1 GGCAAAUAAAAUGUACUGCCAUGGCU---------GAGUGGGUGUGUUUGCCUUGGGUU-UGCAGGCAAACAUGUUUGCUUUUAAUUAAAGGCCAGCAGGGACAUUCGCCGA (((......(((((.((((..(((((---------(((..((..(((((((((.(....-..))))))))))..))..))).........)))))))))..))))).))).. ( -38.70) >DroYak_CAF1 41914 102 - 1 GGCAAAUAAAAUGUACUGCCAUGGGU---------GAGUGGGUGUGUUUGCCUUGGGUU-UGCAGGCAAACAUGUUUGCUUUUAAUUAAAGGCCAGCAGGGACAUUCGCACA ((((............))))....((---------(((((..(.((((.(((((..(((-.(((((((....)))))))....)))..))))).)))).)..)))))))... ( -36.10) >DroAna_CAF1 42425 106 - 1 GGCAAAUAAAAUGUACUGCUCUGGAAGGAGUGUCGGGGGGGAUGUGUUUGCCUUGGGUUCUGCCGGCAAACAUGUUUGCUUUUAAUUAAAGGCCAGCAGGGACA------GA ...........(((.(((((..((....(((...((((.(((((((((((((...((.....))))))))))))))).))))..))).....)))))))..)))------.. ( -31.40) >consensus GGCAAAUAAAAUGUACUGCCAUGGGU_________GAGUGGGUGUGUUUGCCUUGGGUU_UGCAGGCAAACAUGUUUGCUUUUAAUUAAAGGCCAGCAGGGACAUUCGCCGA .........(((((.((((..(((.(.........(((..((..(((((((((..........)))))))))..))..))).........).)))))))..)))))...... (-30.48 = -30.87 + 0.39)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:48:13 2006