Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 985,893 – 985,985 |
Length | 92 |
Max. P | 0.521112 |
Location | 985,893 – 985,985 |
---|---|
Length | 92 |
Sequences | 6 |
Columns | 113 |
Reading direction | reverse |
Mean pairwise identity | 80.89 |
Mean single sequence MFE | -28.25 |
Consensus MFE | -18.34 |
Energy contribution | -17.95 |
Covariance contribution | -0.39 |
Combinations/Pair | 1.17 |
Mean z-score | -1.40 |
Structure conservation index | 0.65 |
SVM decision value | -0.02 |
SVM RNA-class probability | 0.521112 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 985893 92 - 22407834 GUAUGCAAAUUAGUGCAGCUCCUGCAUGUGGCCACAGGCAUUA-----------------CCCGGUGGCUCAUGUGAAUUUCAAAUGGGCGCCA----UGUUGCACAGGAGAG ...((((......)))).(((((((((((((((((.((.....-----------------.)).)))((((((.((.....)).))))))))))----)).)))..))))).. ( -33.40) >DroSec_CAF1 106799 92 - 1 GUAUGCAAAUUAGUGCAGCUCCUGCAUGUGGCCACAGGCAUUA-----------------CCCGGUGGCUCAUGUGAAUUUCAAAUGGGCGCCA----UGUUGCACAGGAGAG ...((((......)))).(((((((((((((((((.((.....-----------------.)).)))((((((.((.....)).))))))))))----)).)))..))))).. ( -33.40) >DroSim_CAF1 107406 92 - 1 GUAUGCAAAUUAGUGCAGCUCCUGCAUGUGGCCACAGGCAUUA-----------------CCCGGUGGCUCAUGUGAAUUUCAAAUGGGCGCCA----UGUUGCACAGGAGAG ...((((......)))).(((((((((((((((((.((.....-----------------.)).)))((((((.((.....)).))))))))))----)).)))..))))).. ( -33.40) >DroEre_CAF1 112952 82 - 1 GUAUGCAAAUUAGUGCAGCUCCUGCCUGUGGCCACAGGCAUUA-----------------CCCGGUGGCUUAUGUGAAUUUCAAAUGGGCGCUUCUUCU-------------- ...((((......))))((...(((((((....)))))))...-----------------.......((((((.((.....)).)))))))).......-------------- ( -22.50) >DroYak_CAF1 113187 90 - 1 GUAUGCAAAUUAGUGCAGCUCCUGCAUGUGGCCACAGGCAUUA-----------------CCCGCUGGCUCAUGUGAAUUUCAAAUGGGCGCCUCUUCUGUUUCUU------C ....(((.....((((((...))))))(.(((....(((....-----------------...))).((((((.((.....)).))))))))).)...))).....------. ( -21.20) >DroAna_CAF1 101109 103 - 1 GUAUGCAAAUUAGUGCAACUCCUGCAUGUGGCUACAGGCAUUACACCACCACCCCCAUCACCCGGU-GCUCAUGUGAAUUUCAAAUGGGCACCA----UGUUCCCCCG----- ((((((......(((((.....))))).((....)).))).)))...................(((-((((((.((.....)).))))))))).----..........----- ( -25.60) >consensus GUAUGCAAAUUAGUGCAGCUCCUGCAUGUGGCCACAGGCAUUA_________________CCCGGUGGCUCAUGUGAAUUUCAAAUGGGCGCCA____UGUUGCACAG____G ((.((((......))))))...(((.(((....))).))).......................(((.((((((.((.....)).))))))))).................... (-18.34 = -17.95 + -0.39)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:33:04 2006