Locus 3257

Sequence ID 2L_DroMel_CAF1
Location 9,405,019 – 9,405,114
Length 95
Max. P 0.844521
window5173

overview

Window 3

Location 9,405,019 – 9,405,114
Length 95
Sequences 5
Columns 96
Reading direction forward
Mean pairwise identity 91.94
Mean single sequence MFE -20.12
Consensus MFE -15.16
Energy contribution -15.44
Covariance contribution 0.28
Combinations/Pair 1.19
Mean z-score -2.17
Structure conservation index 0.75
SVM decision value 0.76
SVM RNA-class probability 0.844521
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 9405019 95 + 22407834
GCUCAAGCAGACAAGGGACCAAGUCGAGGGAGGUUUUCGUAUGUACAUACAUAUAUGAUAAAUAUGUAUAA-AAUCUCCAAAAAAGCACAGCCGCA
(((...((.(((..(....)..)))...(((((((((.((....))((((((((.......))))))))))-)))))))......))..))).... ( -21.20)
>DroSec_CAF1 33688 91 + 1
GCUCAAGCAGACAAGGGACCAAGUCGAGGGAGGUAUAAAUAUGUAUGUACAUA-----UAAAUAUGUAUAAAAAUCCCCAAAAAAGCACAGCCACA
(((...((.(((..(....)..)))(.((((.(((((....)))))(((((((-----....))))))).....)))))......))..))).... ( -17.90)
>DroSim_CAF1 36109 91 + 1
GCUCAAGCAGACAAGGGACCAAGUCGAGGGAGGUAUACAUAUGUAUGUACAUA-----UAAAUAUGUAUAAAAAUCCCCAAAAAAGCACAGCCACA
(((...((.(((..(....)..)))(.((((..(((((((((.((((....))-----)).)))))))))....)))))......))..))).... ( -22.70)
>DroEre_CAF1 34062 91 + 1
GCUCAAGCAGACAAGGGACCAAGUCGAGGGAGGCUUUCAUAUGUACAUGCAUA-----UAAAUAUGUAUAAGAAUCCCCAAAAAAGCACAGCCACA
(((...((.(((..(....)..)))(.((((..((......((((((((....-----....))))))))))..)))))......))..))).... ( -18.80)
>DroYak_CAF1 35692 91 + 1
GCUCAAGCAGACAAGGGACCAAGUCGAGGGAGGUUUUCAUAUGUACGUACAUA-----UAAAUAUGUAUAAAAAUCCCCAAAAAAGCACAGCCACA
(((...((.(((..(....)..)))..(((.((((((....((((((((....-----....)))))))))))))))))......))..))).... ( -20.00)
>consensus
GCUCAAGCAGACAAGGGACCAAGUCGAGGGAGGUUUUCAUAUGUACGUACAUA_____UAAAUAUGUAUAAAAAUCCCCAAAAAAGCACAGCCACA
(((...((.(((..(....)..)))..(((.((((((....((((((((.............)))))))))))))))))......))..))).... (-15.16 = -15.44 +   0.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:48:10 2006