Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 9,398,281 – 9,398,373 |
Length | 92 |
Max. P | 0.971430 |
Location | 9,398,281 – 9,398,373 |
---|---|
Length | 92 |
Sequences | 6 |
Columns | 109 |
Reading direction | forward |
Mean pairwise identity | 76.65 |
Mean single sequence MFE | -28.93 |
Consensus MFE | -10.30 |
Energy contribution | -10.55 |
Covariance contribution | 0.25 |
Combinations/Pair | 1.21 |
Mean z-score | -3.09 |
Structure conservation index | 0.36 |
SVM decision value | 1.68 |
SVM RNA-class probability | 0.971430 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 9398281 92 + 22407834 AGUCAAUAAGGUGGAACU-------UUGUAAUCCUGCCCACAC---CAGCAACAUUCUGUUGCAACGACAAC-AGCAG------GAGCAGAAGCUUCCAUUGCUGCAAC .(((.....((((.....-------...............)))---).(((((.....)))))...)))..(-(((((------((((....)))))...))))).... ( -26.35) >DroSec_CAF1 27084 88 + 1 AGUCAAUAAGGUGGAACU-------UUGUAAUCCUGC-CACAC---CAGCAACAUUCUGUUGCAACGACAGC-AGC---------AGCAGGAGCUUCCAUUGCUGCAAC .(((.....((((((...-------......))).))-)....---..(((((.....)))))...))).((-(((---------((..((.....)).)))))))... ( -28.00) >DroSim_CAF1 29156 88 + 1 AGUCAAUAAGGUGGAACU-------UUGUAAUCCUGC-CACAC---CAGCAACAUUCUGUUGCAACGAUAGC-AGC---------AGCAGGAGCUUCCAUUGCUGCAAC .(((.....((((((...-------......))).))-)....---..(((((.....)))))...))).((-(((---------((..((.....)).)))))))... ( -25.80) >DroEre_CAF1 27486 88 + 1 AGUCAAUAAGGUGGAACU-------UUGUAAUCCUGC-CACACUAGCAGCAACAUUCUGUUGCAACGACA-------------GCGGCAGCAGUUUCCAUUGCUGCUAC .........((((((...-------......))).))-)....(((((((((....(((((((..(....-------------)..)))))))......))))))))). ( -29.00) >DroYak_CAF1 28768 97 + 1 AGUCAAUAAGGUGGAACU-------UUGUAAUCCUGC-CACAC---CAGCAACAUUCUGUUGCAACGACAUC-AGCAGCAGUAGCAGCAGCAGUUGCCAUUGCUGCAAC .(((.....((((((...-------......))).))-)....---..(((((.....)))))...)))...-.((((((((.(((((....))))).))))))))... ( -35.90) >DroAna_CAF1 30114 96 + 1 AGUCAAUAAGGUAGAAAUGGUGGCCGUGUGG---UGCCAAAAC---CUGCAACAA-CAGUGGCAGCUACAAAAAGCA------ACUACAACUACUACUACUACUGCCGC .........(((((...((((((...(((((---(((((....---(((......-))))))).(((......))).------))))))....))))))...))))).. ( -28.50) >consensus AGUCAAUAAGGUGGAACU_______UUGUAAUCCUGC_CACAC___CAGCAACAUUCUGUUGCAACGACAAC_AGC________CAGCAGCAGCUUCCAUUGCUGCAAC .........(((((((................................(((((.....))))).......................((....)))))))))........ (-10.30 = -10.55 + 0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:48:03 2006