Locus 3252

Sequence ID 2L_DroMel_CAF1
Location 9,392,944 – 9,393,042
Length 98
Max. P 0.649325
window5163

overview

Window 3

Location 9,392,944 – 9,393,042
Length 98
Sequences 6
Columns 109
Reading direction reverse
Mean pairwise identity 83.28
Mean single sequence MFE -23.58
Consensus MFE -16.70
Energy contribution -17.59
Covariance contribution 0.89
Combinations/Pair 1.06
Mean z-score -2.00
Structure conservation index 0.71
SVM decision value 0.24
SVM RNA-class probability 0.649325
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 9392944 98 - 22407834
GCACCUGUGCACGCGCCUCAAUGCGCACGGCUGCGCUUUUGGCAAUCAUCAUUCCUUCUCCAUAU--CCUUCGAC---------CCCCGCAGCCACCAUUCUCUUCGCU
(((....)))..((((......))))..((((((((.....)).....................(--(....)).---------....))))))............... ( -23.00)
>DroSec_CAF1 24665 98 - 1
GCACCUGUGCACGCGCCUCAAUGCGCACGGCUGCGCUUUUGGCAAUCAUCAUUCCGUCUCCAUAU--CCUUCGAU---------CCCCGCAGCCCCCACUUUCUUGACU
(((....)))..((((......))))..((((((((.....))....................((--(....)))---------....))))))............... ( -22.70)
>DroSim_CAF1 26765 98 - 1
GCACCUGUGCACGCGCCUCAAUGCGCACGGCUGCGCUUUUGGCAAUCAUCAUUCCGUCUCCAUAU--CCUUCGAU---------CCCCGCAGCCACCACUCUCUUGACU
(((....)))..((((......))))..((((((((.....))....................((--(....)))---------....))))))............... ( -23.60)
>DroEre_CAF1 25001 107 - 1
GCACCUGUGCACGCGCCUCAAUGCGCACGGCUGCGCUUUUGGCAAUCAUCAUUCCUCCGCCAUAU--CCUUCCAUAUCCUUCCAUCUCGCAGCCUCCCUUCUCUUAACU
(((....)))..((((......))))..(((((((....((((...............))))(((--......)))...........)))))))............... ( -24.96)
>DroYak_CAF1 26300 98 - 1
GCACCUGUGCACGCGCCUCAAUGCGCACGGCUGCGCUUUUGGCAAUCAUCAUUCCUUCUCCAUAU--CCUUCGAU---------CCUCGCAGCCUCCCUUCUGUUCACU
......(((.((((((......))))..((((((((.....))....................((--(....)))---------....))))))........)).))). ( -23.70)
>DroAna_CAF1 25278 92 - 1
GCACCUGUGCACGCGCACCAAUGCGCACGGCUGCGCUUUUGGCAAUCAUCCGGCUUCUGCCAGAGCCCCUUCGUU---------UC--------GUCCUUCUCUUAACU
(((....)))..(((((....)))))..((((..((.....))........(((....)))..))))........---------..--------............... ( -23.50)
>consensus
GCACCUGUGCACGCGCCUCAAUGCGCACGGCUGCGCUUUUGGCAAUCAUCAUUCCUUCUCCAUAU__CCUUCGAU_________CCCCGCAGCCACCAUUCUCUUAACU
(((....)))..((((......))))..((((((((.....)).........((..................))..............))))))............... (-16.70 = -17.59 +   0.89)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:48:00 2006