Locus 3251

Sequence ID 2L_DroMel_CAF1
Location 9,390,203 – 9,390,312
Length 109
Max. P 0.563574
window5162

overview

Window 2

Location 9,390,203 – 9,390,312
Length 109
Sequences 6
Columns 114
Reading direction forward
Mean pairwise identity 82.77
Mean single sequence MFE -23.90
Consensus MFE -16.79
Energy contribution -17.27
Covariance contribution 0.48
Combinations/Pair 1.16
Mean z-score -1.60
Structure conservation index 0.70
SVM decision value 0.06
SVM RNA-class probability 0.563574
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 9390203 109 + 22407834
UAUAUAUACUUAUAUGCUUAU--CA---AAAUUUAAUUUUCCGACAGAGUCUGGAGACCCUUGACAACGGCAAGCCCUACAGCAUGUCCUACAACGUGGAUCUCCCGACUGCCA
((((((....)))))).....--..---...................((((.(((((.((.((.....((((.((......)).))))......)).)).))))).)))).... ( -21.80)
>DroVir_CAF1 25878 101 + 1
CCU-----------UUCUAAU--CACCUUGCCUAUAUUUUCAUUUAGAGUCUGGAAACCCUGGACAAUGGCAAGCCCUACAGCAUGGCCUACAAUGUGGAUUUGCCCACGGCCA
...-----------.......--...((((((.......((.....))(((..(.....)..)))...))))))..........(((((......((((......))))))))) ( -25.70)
>DroSec_CAF1 21869 108 + 1
UAUAUAUACUUAUAUGCUUAU--CA---A-UUUAAAUUUUCCAACAGAGUCUGGAGACCCUCGACAACGGCAAGCCCUACAGCAUGUCCUACAACGUGGAUCUCCCGACUGCCA
((((((....)))))).....--..---.-.................((((.(((((.((.((.....((((.((......)).))))......)).)).))))).)))).... ( -24.20)
>DroSim_CAF1 23956 108 + 1
UAUAUAUACUUAUAUGCUAAU--CA---A-UUUAAAUUUUCCGACAGAGUCUGGAGACCCUCGACAACGGCAAGCCCUACAGCAUGUCCUACAACGUGGAUCUCCCGACUGCCA
((((((....)))))).....--..---.-.................((((.(((((.((.((.....((((.((......)).))))......)).)).))))).)))).... ( -24.20)
>DroEre_CAF1 22177 108 + 1
AAUGUAUAUUUAUAUGCUUAU--CA---A-UUUCAAUUUCCCGCCAGAGUCUGGAGACCCUCGACAACGGCAAGCCCUACAGCAUGUCCUACAACGUGGAUCUCCCGACUGCCA
...(((((....)))))....--..---.-............((...((((.(((((.((.((.....((((.((......)).))))......)).)).))))).)))))).. ( -24.90)
>DroYak_CAF1 23440 110 + 1
UAUACAUACUUAUAUUUUCAAUGAA---A-UUUAUAUUUCCCGACAGAGUCUGGAGACCCUCGACAACGGAAAGCCCUACGCCAUGUCCUACAACGUGGAUCUCCCGACUGCCA
......................(((---(-(....))))).......((((.(((((.((.((.....(((..((.....))....))).....)).)).))))).)))).... ( -22.60)
>consensus
UAUAUAUACUUAUAUGCUUAU__CA___A_UUUAAAUUUUCCGACAGAGUCUGGAGACCCUCGACAACGGCAAGCCCUACAGCAUGUCCUACAACGUGGAUCUCCCGACUGCCA
...............................................((((.(((((.((.((.....((((.((......)).)).)).....)).)).))))).)))).... (-16.79 = -17.27 +   0.48)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:47:59 2006