Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 9,383,754 – 9,383,861 |
Length | 107 |
Max. P | 0.536929 |
Location | 9,383,754 – 9,383,861 |
---|---|
Length | 107 |
Sequences | 6 |
Columns | 116 |
Reading direction | reverse |
Mean pairwise identity | 80.84 |
Mean single sequence MFE | -32.93 |
Consensus MFE | -20.83 |
Energy contribution | -22.97 |
Covariance contribution | 2.14 |
Combinations/Pair | 1.16 |
Mean z-score | -1.50 |
Structure conservation index | 0.63 |
SVM decision value | 0.01 |
SVM RNA-class probability | 0.536929 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 9383754 107 - 22407834 GAGUCCCUCCAGGGGGUGUGGUUAAAGCUGGGGGUCCAUCGGAAAACCCAUCGCCCUUGUG---GAAUAU------AUGUAUAAUCAAAUUAUGCACGCACCAAAUGCUCCAGACA (((((((....)))((((((......((((((..(((...)))...))))..))((....)---).....------.((((((((...))))))))))))))....))))...... ( -31.30) >DroSec_CAF1 16216 107 - 1 GAGUCCCUCCAGGGGGUGUGGUUACAGCUGGGGGUCCUUCGGAAAACCCACCCUCCUUGGG---GAAUAU------AUGUAUAAUCAAAUUAUGCACGCACCAAAUGCUCCAGACA ..(((((((.((((((((.((((....((((((...))))))..))))))))).))).)))---).....------.((((((((...)))))))).(((.....)))....))). ( -36.30) >DroSim_CAF1 15990 103 - 1 GAGUCCCUCCAGGGGGUGUGGUUACAGCUGGGGGUCCUUCGGAAAACCCACCCUCCUUGGG---GAAUAU----------AUAAUCAAAUUAUGCACGCACCAAAUGCUCCAGACA ..(((((((.((((((((.((((....((((((...))))))..))))))))).))).)))---).....----------.................(((.....)))....))). ( -32.60) >DroEre_CAF1 15973 112 - 1 GAGUCCCUCCAGGGGGUGUGGUUAUAGCUAGGGGUCCUUUGGC-GACCCACCCUCCUUGGG---GAAUAUACUUGUAUGUAUAAUCAAAUUAUGCACGCACCAAAUGCUCCAGACA ((((.((((.((((((((.((((...(((((((...)))))))-))))))))).))).)))---)........((..((((((((...))))))))..))......))))...... ( -40.00) >DroYak_CAF1 16796 107 - 1 GAGUCCCUCCAGGGGGUGUGGUUAAGGCUAGGGGUCCUUCGGAAAACCCACCCUUCUUGGG---GAAUAU------AUGUAUAAUCAAAUUAUGCACGCACCAAAUGCUCCAGACA (((((((....)))((((((..........(((.(((...)))...))).((((....)))---).....------.((((((((...))))))))))))))....))))...... ( -34.00) >DroPer_CAF1 18644 92 - 1 GAGUCC-UCGAGGGGCAACGAU-----------CUCCUCC--AUUAUGCAGUGUCCUAGGGUGGGGU----------UGUAUAAUCAAAUUAUGCACGCACCAAAAGCUUCAGACA ..(((.-..((((((.......-----------)))))).--....((.(((.......((((.(..----------((((((((...))))))))).))))....))).))))). ( -23.40) >consensus GAGUCCCUCCAGGGGGUGUGGUUAAAGCUGGGGGUCCUUCGGAAAACCCACCCUCCUUGGG___GAAUAU______AUGUAUAAUCAAAUUAUGCACGCACCAAAUGCUCCAGACA ..(((...((((((((.((((......((((((...)))))).....)))).)))))))).................((((((((...)))))))).(((.....)))....))). (-20.83 = -22.97 + 2.14)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:47:58 2006