Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 9,351,742 – 9,351,838 |
Length | 96 |
Max. P | 0.500000 |
Location | 9,351,742 – 9,351,838 |
---|---|
Length | 96 |
Sequences | 6 |
Columns | 108 |
Reading direction | reverse |
Mean pairwise identity | 79.47 |
Mean single sequence MFE | -24.60 |
Consensus MFE | -12.97 |
Energy contribution | -14.58 |
Covariance contribution | 1.62 |
Combinations/Pair | 1.21 |
Mean z-score | -1.86 |
Structure conservation index | 0.53 |
SVM decision value | -0.06 |
SVM RNA-class probability | 0.500000 |
Prediction | OTHER |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 9351742 96 - 22407834 UUUCUGCCGUUUCCCGCUUUAGCCGGGAAUAUGAUUUGUCUGCAAAGUUGAAAUAGAUUUU-UCAACAAUUUUCGGUAAGCCCGGCG------C-----UAUGCAAAU .....((((......((((..((((..(((....((((....))))(((((((......))-))))).)))..)))))))).)))).------.-----......... ( -26.40) >DroSec_CAF1 20636 96 - 1 UUUUUGCCGUUUCCCGCUUCAGCCGGGAAUAUGAUUUGUCUGCAAAGUUGAAAUAGAUUUU-UCAACAAUUUUCGGUAAGCCCGGCG------C-----UAUGCAAAU .....((((......((((..((((..(((....((((....))))(((((((......))-))))).)))..)))))))).)))).------.-----......... ( -26.40) >DroSim_CAF1 20766 96 - 1 UUUCUGCCGUUUCCCGCUUCAGCCGGGAAUAUGAUUUGUCUGCAAAGUUGAAAUAGAUUUU-UCAACAAUUUUCGGUAAGCCCGGCG------C-----UAUGCAAAU .....((((......((((..((((..(((....((((....))))(((((((......))-))))).)))..)))))))).)))).------.-----......... ( -26.40) >DroEre_CAF1 21055 107 - 1 UUUCUACUGUUGCCCGUUUGAGCCGAGAAUAUGAUUUGUCUGCAAAGUUGAAAUAGAGUUU-UCAACAAUUUUCGGUAAGCCCGUUACUGAUGCAUACUGAUGCAAAU ........((.((..((((..(((((((((....((((....))))(((((((......))-))))).)))))))))))))..)).))...(((((....)))))... ( -25.50) >DroYak_CAF1 21283 96 - 1 UUUCUGCUGUUUUCCGCUUCAGCCGAGAAUAUGAUUUGUCUGCAAAGUUGAAAUAGAUUUU-UCAACAAUUUUCGGUAAGCCCAGCG------C-----AAUGCAAAU .....((((......((((..(((((((((....((((....))))(((((((......))-))))).))))))))))))).)))).------.-----......... ( -25.70) >DroAna_CAF1 21909 80 - 1 UUC--------------UCACGCCCAAAUUAUGAUUUGUCUGCAAAGUUUGAAUGGAUUUUGCCAACAAUUCCCUG---GCUCGGCC------C-----CAUGCGAAU ...--------------...(((.........((.((((..(((((((((....)))))))))..)))).))...(---((...)))------.-----...)))... ( -17.20) >consensus UUUCUGCCGUUUCCCGCUUCAGCCGAGAAUAUGAUUUGUCUGCAAAGUUGAAAUAGAUUUU_UCAACAAUUUUCGGUAAGCCCGGCG______C_____UAUGCAAAU .....((((......((((..(((((((((....((((....))))(((((((......)).))))).))))))))))))).))))...................... (-12.97 = -14.58 + 1.62)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:47:55 2006