Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 9,351,270 – 9,351,377 |
Length | 107 |
Max. P | 0.520634 |
Location | 9,351,270 – 9,351,377 |
---|---|
Length | 107 |
Sequences | 6 |
Columns | 109 |
Reading direction | forward |
Mean pairwise identity | 88.64 |
Mean single sequence MFE | -32.18 |
Consensus MFE | -24.02 |
Energy contribution | -24.22 |
Covariance contribution | 0.20 |
Combinations/Pair | 1.25 |
Mean z-score | -2.83 |
Structure conservation index | 0.75 |
SVM decision value | -0.03 |
SVM RNA-class probability | 0.520634 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 9351270 107 + 22407834 ACGGCUACUGCUAACAUGUGAUGCAGGCGACAAGUGAAGUUUGUCCGUUGUCGGAAAAUCUAAUAACCGACAGCAAGCAAACACACAAUAACGCCGAGUUUUC--CAGC .((((..((((...........)))).......(((..((((((..((((((((............))))))))..)))))).)))......)))).......--.... ( -32.90) >DroSec_CAF1 20167 106 + 1 ACGGCUACUGCUAACAUGUGAUGCA-GCGACAAGUGAAGUUUGUCUGUUGUCGGAAAAUCUAAUAACCGACAGCAAGCAAACACACAAUAACGCCGAGUUUUC--CAGC .((((..((((...........)))-)......(((..(((((..(((((((((............)))))))))..))))).)))......)))).......--.... ( -34.70) >DroSim_CAF1 20299 104 + 1 --GGCUACUGCUAACAUGUGAUGCA-GCGACAAGUGAAGUUUGUCUGUUGUCGGAAAAUCUAAUAACCGACAGCAAGCAAACACACAAUAACGCCGAGUUUUC--CAGC --(((..((((...........)))-)......(((..(((((..(((((((((............)))))))))..))))).)))......)))........--.... ( -32.40) >DroEre_CAF1 20622 105 + 1 --GGCAACUGCCAACAUGUGAUGCAGGCGACAAGUGAACUUUGCCUGUUGUCGGAAAAUCUAAUAACCGACAGCGAGCAAACACACAAUAACGCCGAGUUUUC--CGGC --(((....)))....((((.(((((((((..((....))))))))((((((((............))))))))..)))..)))).......((((.......--)))) ( -35.60) >DroYak_CAF1 20804 105 + 1 --GGCUACUGCGAACAUGUGAUGCAGGCGACAAGUGAACUUUGUCUGUUGUCGGAAAAUCUAAUAACCGACAGCGAGCAAACACACAAUAACGCCGAGUUUUC--CCGC --((..((((((....((((.((...((((((((....).)))))(((((((((............))))))))).))...))))))....)))..)))....--)).. ( -29.40) >DroAna_CAF1 21476 98 + 1 -------UUGCUAACAUCUGAUGUUAGCGACAAGUGAACUUUGUCUGUUGUCGGGAAAUCUAAUAACGGACAACGAACAAACACACAAUAACU----GUUUGCAGCAGC -------((((((((((...))))))))))...(((...(((((.(((((((.(............).))))))).)))))..))).....((----((.....)))). ( -28.10) >consensus __GGCUACUGCUAACAUGUGAUGCAGGCGACAAGUGAACUUUGUCUGUUGUCGGAAAAUCUAAUAACCGACAGCAAGCAAACACACAAUAACGCCGAGUUUUC__CAGC ..(((..((((...........)))).......(((...(((((.(((((((((............))))))))).)))))..)))......))).............. (-24.02 = -24.22 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:47:54 2006