Locus 3246

Sequence ID 2L_DroMel_CAF1
Location 9,346,389 – 9,346,505
Length 116
Max. P 0.935762
window5155

overview

Window 5

Location 9,346,389 – 9,346,505
Length 116
Sequences 5
Columns 118
Reading direction reverse
Mean pairwise identity 84.53
Mean single sequence MFE -17.77
Consensus MFE -14.30
Energy contribution -14.94
Covariance contribution 0.64
Combinations/Pair 1.06
Mean z-score -2.12
Structure conservation index 0.80
SVM decision value 1.25
SVM RNA-class probability 0.935762
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 9346389 116 - 22407834
UAGCUAAACAACUUCCGCCCGACUGAUUGUGAGUCAAUUACAAAAUUGCAUUUUCCCCCAAGGGGUUA--CCAAAACCCACCGCCCUUUAACUACACACCACACCACGCCAUCACCCA
....................(..((((.(((.(.(((((....))))))..........(((((((..--............))))))).................))).))))..). ( -13.74)
>DroSec_CAF1 15291 111 - 1
UAGCUAAACAACUUCCGCCCGACUGAUUGUGAGUCAAUUACAAAAUUGCAUUUUCCCCCAAGGGGUUA--CCAAAACCCCCAGUCCUUUAA-----UACCACACCACACCAUCACCCA
....................(((((.((((((.....))))))..................((((((.--....)))))))))))......-----...................... ( -19.20)
>DroSim_CAF1 15417 111 - 1
UAGCUAAACAACUUCCGCCUGACUGAUUGUGAGUCAAUUACAAAAUUGCAUUUUCCCCCAAGGGGUUA--CCAAAACCCCCAGUCCUUUAA-----UACCACACCACACCAUCACCCA
....................(((((.((((((.....))))))..................((((((.--....)))))))))))......-----...................... ( -18.90)
>DroEre_CAF1 15923 89 - 1
UAGCUAAACAACUUCCGCCCGACUGAUUGUGAGUCAAUUACAAAAUUGCAUUUUCCCCCAAGGGGCUA--CCAAAACCUCCAGUCCUGGAA---------------------------
.............((((...(((((.((((((.....))))))...........((((...))))...--..........))))).)))).--------------------------- ( -18.10)
>DroYak_CAF1 15885 113 - 1
UAGCUAAACAACUUCCGCUCGACUGAUUGUGAGUCAAUUACAAAAUUGCAUUUUCCCCCAAGGGGUUAACCCAAAACCCCCAGUCCUUGAA-----CACCACAUCCUACCACCAUCCA
....................(((((.((((((.....))))))..................((((((.......)))))))))))......-----...................... ( -18.90)
>consensus
UAGCUAAACAACUUCCGCCCGACUGAUUGUGAGUCAAUUACAAAAUUGCAUUUUCCCCCAAGGGGUUA__CCAAAACCCCCAGUCCUUUAA_____CACCACACCACACCAUCACCCA
....................(((((.((((((.....))))))..................((((((.......)))))))))))................................. (-14.30 = -14.94 +   0.64)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:47:53 2006