Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 9,340,423 – 9,340,517 |
Length | 94 |
Max. P | 0.658464 |
Location | 9,340,423 – 9,340,517 |
---|---|
Length | 94 |
Sequences | 6 |
Columns | 104 |
Reading direction | reverse |
Mean pairwise identity | 78.13 |
Mean single sequence MFE | -26.77 |
Consensus MFE | -17.52 |
Energy contribution | -18.35 |
Covariance contribution | 0.83 |
Combinations/Pair | 1.00 |
Mean z-score | -1.35 |
Structure conservation index | 0.65 |
SVM decision value | 0.26 |
SVM RNA-class probability | 0.658464 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 9340423 94 - 22407834 AUCCUU-UGA--UUCGAAG-------GCUAUAGACUUACAGUAGCCAAUCGACGGCUAUGAUGAGGGACACAUCCUUCGGCUCCAAGCCCACUGUGUCCAGCAC ...(((-((.--..)))))-------(((.....((((..((((((.......))))))..))))(((((((......(((.....)))...)))))))))).. ( -30.70) >DroPse_CAF1 10374 94 - 1 ---C-----A--CAGGAAGGACAUGGACCUAGGACUUACAGUAGCCAAUCGACAGCUAUGAUGAGGGACACAUCCUUCGGCUCCAGGCCCACAGUGUCCAGCAC ---.-----.--......((((((((.(((.(((((....(((((.........)))))...((((((....)))))))).)))))).)))...)))))..... ( -28.20) >DroGri_CAF1 13034 102 - 1 CAUCUAGCAACAGUCAAAG--UGUUGAAUUAGUACUUACAGCAGCCAAUCGACAGCGAUGAUCAGUGAGACAUCCUUGGGCUCCAGGCCAACCGUGUCCAGUAC .......(((((.......--))))).....(((((....((.....((((....)))).....))(.(((((..((((.(....).))))..))))))))))) ( -20.00) >DroSec_CAF1 9204 94 - 1 AUCCUU-UGA--UUCAAAA-------UCUUCCGACUUACAGUAGCCAAUCGACGGCUAUGAUGAGGGACACAUCCUUCGGCUCCAAGCCCACUGUGUCCAGCAC ......-...--.......-------........((((..((((((.......))))))..))))(((((((......(((.....)))...)))))))..... ( -26.00) >DroYak_CAF1 9619 95 - 1 AUCCUUUCAA--UUCGAAG-------GCUUCCGACUUACAGUAGCCAAUCGACGGCUAUGAUGAGGGACACAUCCUUCGGCUCCAAGCCCACCGUGUCCAGCAC ...((((...--...))))-------(((.....((((..((((((.......))))))..))))((((((.......(((.....)))....))))))))).. ( -27.50) >DroPer_CAF1 10179 94 - 1 ---C-----A--CAGGAAGGACAUGGACCUAGGACUUACAGUAGCCAAUCGACAGCUAUGAUGAGGGACACAUCCUUCGGCUCCAGGCCCACAGUGUCCAGCAC ---.-----.--......((((((((.(((.(((((....(((((.........)))))...((((((....)))))))).)))))).)))...)))))..... ( -28.20) >consensus AUCCUU___A__UUCGAAG_______ACUUAGGACUUACAGUAGCCAAUCGACAGCUAUGAUGAGGGACACAUCCUUCGGCUCCAAGCCCACAGUGUCCAGCAC ..................................((((..(((((.........)))))..))))((((((.......(((.....)))....))))))..... (-17.52 = -18.35 + 0.83)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:47:52 2006