Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 9,335,466 – 9,335,557 |
Length | 91 |
Max. P | 0.500000 |
Location | 9,335,466 – 9,335,557 |
---|---|
Length | 91 |
Sequences | 6 |
Columns | 99 |
Reading direction | reverse |
Mean pairwise identity | 82.85 |
Mean single sequence MFE | -26.22 |
Consensus MFE | -17.75 |
Energy contribution | -19.20 |
Covariance contribution | 1.45 |
Combinations/Pair | 1.20 |
Mean z-score | -1.57 |
Structure conservation index | 0.68 |
SVM decision value | -0.06 |
SVM RNA-class probability | 0.500000 |
Prediction | OTHER |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 9335466 91 - 22407834 GCAAACUGAAUUCAGAGCCCAUGUGCGAGGGGCAGCAAA--------UUCAUUGUCAAUGCAAAUCAAUUUGCAUUUCGCGGGGGUUCGAUCGGACAAA .....((((..((.((((((...(((((..(((((....--------....)))))((((((((....))))))))))))).))))))))))))..... ( -28.90) >DroSec_CAF1 4276 91 - 1 GCAAACUGAAUUCAGAGCCCAUGUGCGAGGGGCAGCAAA--------UUCAUUGUCAAUGCAAAUUGAUUUGCAUUUCGCGGGGGUUCGAUCGGACAAA .....((((..((.((((((...(((((..(((((....--------....)))))((((((((....))))))))))))).))))))))))))..... ( -28.90) >DroSim_CAF1 4327 91 - 1 GCAAACUGAAUUCAGAGCCCAUGUGCGAGGGGCAGCAAA--------UUCAUUGUCAAUGCAAAUUGAUUUGCAUUUCGCGGGGGUUCGAUCGGACAAA .....((((..((.((((((...(((((..(((((....--------....)))))((((((((....))))))))))))).))))))))))))..... ( -28.90) >DroEre_CAF1 5130 90 - 1 GCAAACUGAAUUCAGAGCCCAUGUGCGAGGAACAGCAAA--------UUCAUUGUCAAUGCAAAUUGAUUUGCAUAUCGCGGGG-AUCGAUUAGACAAA .....((((..((.((.(((....((((......(((((--------((..((((....))))...)))))))...)))).)))-.))))))))..... ( -19.50) >DroYak_CAF1 4383 91 - 1 GCAAACUGAAUUCAGAGCCCAUGUGCGCGGGGCAGCAAA--------UUCAUUGUCAAUGCAAAUUGAUUUGCAUUUCGCGGGGGUUCGAUUAGACAAA .....((((..((.((((((.....((((..(..(((((--------((..((((....))))...))))))).)..)))).))))))))))))..... ( -27.10) >DroPer_CAF1 5083 95 - 1 GCAAACUC--UGGGGUAACCAUGUUUGAGUCGCUUAAAAUACGACUUUUCAUUGUCAAUGCAAAUUUAGUUGCACUUCCAAGGGGGU--GUGGGACUUG .(((((..--(((.....))).)))))((((...........(((........))).............(..((((((....)))))--)..))))).. ( -24.00) >consensus GCAAACUGAAUUCAGAGCCCAUGUGCGAGGGGCAGCAAA________UUCAUUGUCAAUGCAAAUUGAUUUGCAUUUCGCGGGGGUUCGAUCGGACAAA .....((((.....((((((...(((((..(((((..((........))..)))))((((((((....))))))))))))).))))))..))))..... (-17.75 = -19.20 + 1.45)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:47:51 2006