| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 9,329,719 – 9,329,823 |
| Length | 104 |
| Max. P | 0.711993 |
| Location | 9,329,719 – 9,329,823 |
|---|---|
| Length | 104 |
| Sequences | 3 |
| Columns | 111 |
| Reading direction | forward |
| Mean pairwise identity | 86.73 |
| Mean single sequence MFE | -31.70 |
| Consensus MFE | -27.67 |
| Energy contribution | -27.57 |
| Covariance contribution | -0.11 |
| Combinations/Pair | 1.06 |
| Mean z-score | -1.73 |
| Structure conservation index | 0.87 |
| SVM decision value | 0.38 |
| SVM RNA-class probability | 0.711993 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 9329719 104 + 22407834 AAGUGGUGUCCCCGGAUAAGACGACUCCCCUGGAGGCAGCAUCGGAAAUUGAUCGAAAGUAAGUUUUCGUGGA-------GAGUCUAAUAGGGCAUUACUUAACCAGACGA (((((((((((....((.((((..((((.(((....)))...((((((((...(....)..)))))))).)))-------).)))).)).))))))))))).......... ( -32.50) >DroSec_CAF1 158711 102 + 1 AAGUGGUGUCCCCGGAUAAGACGACUCCCCUGGAGGCAGCAUCGGAAAUUGAUCGAAAGUAAGUUUUCGUGUGGAAAACGGAGUCUAUUAGGGCGUUACUUA--------- ((((..(((((...((((....((((((((....))..(((.((((((((...(....)..))))))))))).......)))))))))).)))))..)))).--------- ( -32.50) >DroSim_CAF1 162807 102 + 1 AAGUGGUGUCCCCGGAUAAGACGACUCCCCUGGAGGCAGCAUCGGAAAUUGAUCGAAAGUAAGUUUUCGUGGGAAAAACGGAGUCUAUUAGGGUGUUACUUA--------- ((((((..(((...((((....((((((.(((....)))((.((((((((...(....)..))))))))))........)))))))))).)))..)))))).--------- ( -30.10) >consensus AAGUGGUGUCCCCGGAUAAGACGACUCCCCUGGAGGCAGCAUCGGAAAUUGAUCGAAAGUAAGUUUUCGUGGG_AAAACGGAGUCUAUUAGGGCGUUACUUA_________ ((((..(((((...((((.(((..((((...))))....((.((((((((...(....)..))))))))))...........))))))).)))))..)))).......... (-27.67 = -27.57 + -0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:47:50 2006